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Publications
Author(s) | Title | Journal | Lab |
|---|---|---|---|
| Tal Ben-Horin, Matthew Iacchei, Kim A. Selkoe, Thien T. Mai & Rob J. Toonen | Eight polymorphic microsatellite loci for the California spiny lobster, Panulirus interruptus | Molecular Ecology Resources | R. Toonen |
| Madeline JH van Oppen, Jo-Ann Leong, Ruth D. Gates | Coral-virus Interactions: A Double-Edged Sword? | Symbiosis | R. Gates |
| Deborah J. Gochfeld, Greta S. Aeby | Antibacterial Chemical Defenses in Hawaiian Corals Provide Possible Protection from Disease | Marine Ecology Progress Series | G. Aeby |
| Schultz, J.K., J.D. Baker, R.J. Toonen & B.W. Bowen. | Extremely low genetic diversity in the endangered Hawaiian monk seal (Monachus schauinslandi) | Journal of Heredity | R. Toonen |
| Mooney, Terrance Aran; Nachtigall, Paul E.; Castellote, Manuel; Taylor, Kristen A.; Pacini, Aude F.; Esteban, Jose-Antonio | Hearing Pathways and Directional Sensitivity of the Beluga Whale, Delphinapterus Leucas | Journal of Experimental Marine Biology and Ecology | Nachtigall, A. Pacini |
| Mayfield, Anderson B.; Hirst, Marissa B.; Gates, Ruth D. | Gene Expression Normalization in a Dual-compartment System: A Real-time Quantitative PCR Protocol for symbiotic Anthozoans | Molecular Ecology Resources | R. Gates |
| Karl, Steve A. | The effect of multiple paternity on the genetically effective size of a population | Molecular Ecology | S. Karl |
| Kajiura, Steve M., Fitzgerald, Timothy P. | Response of juvenile scalloped hammerhead sharks to electric stimuli | Zoology | |
| Schultz JK, Feldheim KA, Gruber SH, Ashley MA, Bowen BW | Global phylogeography and seascape ecology of the lemon sharks (Genus Negaprion) | Molecular Ecology | B. Bowen |
| Karen P. Maruska and Timothy C Tricas | Central projections of octavolateralis nerves in the brain of a soniferous damselfish (Abudefduf abdominalis) | Journal of Comparative Neurology | T. Tricas |
| Selkoe, Kim and Christine M. Henzler, Steven D. Gaines | Seascape genetics and the spatial ecology of marine populations | Fish and Fisheries | |
| Palardy JE, Rodrigues LJ, Grottoli AG | The importance of zooplankton to the daily metabolic carbon requirements of healthy and bleached corals at two depths | Journal of Experimental Marine Biology and Ecology | |
| Caroline V. Palmer, Melissa S. Roth and Ruth D. Gates | Red Fluorescent protein responsible for pigmentation in trematode infected porites compressa Tissues | Biological Bulletin | R. Gates |
| Erik Franklin, Corrinne V. Brong, Allexa R. Dow, Matthew T. Craig | Length-weight and length-length relationships of three endemic butterflyfish species (Chaetodontidae) from coral reefs of the Northwestern Hawaiian Islands, USA | Journal of Applied Ichthyology | E. Franklin |
| T. Aran Mooney1, Paul E, Nachtigall1, Kristen A. Taylor1, Marianne H. Rasmussen2 and Lee A. Miller3 | Auditory temporal resolution of a wild white-beaked dolphin (Lagenorhynchus albirostris) | Journal of Comparative Phsyiology | Nachtigall |
| Eble, Jeff A. Toonen, Robert J., Bowen, Brian W. | Endemism and dispersal: comparative phylogeography of three surgeonfishes across the Hawaiian Archipelago | Marine Biology | R. Toonen, B. Bowen |
| Karl, Stephen A., Curtis, C, and BS Stewart | Pleistocene population expansions of Antarctic seals | Molecular Ecology | S. Karl |
| Lammers, Marc O., and Manuel Castelllote | The Beluga Whale Produces Two Pulses to Form Its Sonar Signal | Biology Letters | Whit Au (MMRP) |
| Olson, N.D., and T.D. Ainsworth, R.D. Gates, M. Takabayashi | Diazotrophic bacteria associated with Hawaiian Montipora corals: Diversity and Abundance in Correlation with Symbiotic Dinoflagellates | Journal of Experimental Marine Biology and Ecology | R. Gates |
| Apprill, Amy, Marlow, Heather Q., Martindale, Mark Q, and Michael Rappe | The onset of microbial associations in the coral Pocillopora meandrina | The ISME Journal (2009) | M. Rappe |
| Hughes AD, Grottoli AG, Pease TK, Matsui Y | Why all carbon is not equal: the Acquisition and Utilization of Photosynthetically and Heterotrophically Acquired Carbon in Non-Bleached and Bleached Corals | PNAS | Paul Jokiel (Point Lab) |
| Wagner, Daniel, Samuel E. Kahng, Robert J. Toonen | Observations on the life history and feeding ecology of a specialized nudibranch predator (Phyllodesium poindimiei), with implications for biocontrol of an invasive octocoral (Carijoa riisei) in Hawaii | Journal of Experimental Marine Biology & Ecology | R. Toonen |
| Misumi, Ichiro, Teresa D. Lewis, and Jo-Ann C. Leong | Elicited cross-protection and specific antibodies in Mozambique tilapia (Oreochromis mossambicus) against two different immobilization serotypes of Cryptocaryon irritans isolated in Hawaii | Fish and Shellfish Immunology | Jo-Ann Leong |
| Supin, Alexander, Paul Nachtigall | Forward Masking Based Gain Control in Odontocete Biosonar: An Evoked-Potential | Journal of the Acoustical Society of America | Paul Nachtigall |
| T. Aran Mooney, Paul E. Nachtigall, Stephanie Vlachos | Sonar induced hearing loss in dolphins | Biology Letters | Paul Nachtigall |
| Whitlow W. L. Au, Brian K. Branstetter, Kelly J. Benoit-Bird, Ronald A. Kastelein | Acoustic basis for fish prey discrimination by echolocating dolphins and porpoises | Journal of Acoustical Society of America | Whit Au (MMRP) |
| Alexander Eiler1, Darin H. Hayakawa1, Matthew J. Church2, David M. Karl2, and Michael S. Rappé1 | Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre | Environmental Microbiology | Mike Rappe |
| WK Fitt, RD Gates, O. Hoegh-Guldberg, JC Bythell, A Jatkar, AG Grottoli, M Gomez, P Fisher, TC Lajuenesse, O Pantos, R Iglesias-Prieto, DJ Franklin, LJ Rodrigues, JM Torregiani, R van Woesik, MP Lesser | Response of two species of Indo-Pacific corals, Porites cylindrica and Stylophora pistillata, to short-term thermal stress: the host does matter in determining the tolerance of corals to bleaching | Journal of Experimental Marine Biology and Ecology (JEMBE) | Ruth Gates |
| Michael Stat, Xavier Pochon, Rebecca OM Cowie, Ruth D Gates | Specificity in communities of Symbiodinium in corals from Johnston Atoll | Marine Ecology Progress Series | R. Gates |
| Erik C, Franklin | Marine Landscape Ecology Emerges from Developments in Seafloor Mapping, GPS, and GIS | Ocean Globe | Erik Franklin |
| Clyde S. Tamaru, Dave Bybee, Karen Brittain, Michelle Nguyen, Harry Ako and Adam Baker | Growth and Survival of Juvenile Feather Duster Worms, Sabellastarte spectabilis, Fed Live and Preserved Algae | Journal of World Aquaculture Society | Jo-Ann Leong |
| Kuulei S. Rodgers, Paul Jokiel, Christopher Bird and Eric Brown | Quantifying the condition of Hawaiian Coral Reef | Aquatic Conservation | Paul Jokiel (Point Lab) |
| Cornelisen, C.D. and F.I.M Thomas | Prediction and validation of flow dependent uptake of ammonium over a seagrass-hardbottom community in Florida | Marine Ecology Progress Series | Flo Thomas |
| T. Aran Mooney, Aude F. Pacini, and Paul E. Nachtigall | False killer whale (Pseudorca crassidens) echolocation and acoustic disruption: Implications for long-line bycatch and depredation | Canadian Journal of Zoology | P. Nachtigall |
| Michelle R. Gaither (corresponding author), Robert J. Toonen, D. Ross Robertson, Serge Planes, Brian W. Bowen | Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus) | Journal of Biogeography | R. Toonen/B. Bowen |
| Timothy C. Tricas, Stephen M Kajira & Adam P. Summers | Response of the hammerhead shark olfactory epithelim to amino acid stimuli | Journal of Comparative Physiology A | T. Tricas |
| Lesser, M.P., Slattery, M, Stat., Ojimi M., Gates, R. D. and Grottoli, A. | Photoacclimatization by the Coral Montastraea cavernosa in the Mesophotic Zone: Light, Food and Genetics | Ecology Journal | R. Gates |
| Yancey, P.H., Heppenstall, M., Ly, Raymond, M., Andrell, R.M, Gates, R. D., Carter, V.L. and Hagedorn, M. | Betaines and dimethylsulfoniopropionate (DMSP) as major osmolytes in Cnidaria with endosymbiotic dinoflagellates | Journal of Physiological and Biochemical Zoology | R. Gates |
| Hedouin, Laetitia, Amanda J. Reichelt-Brushett, Rudth D. gates | Assessment of metals and a metallois in sediments from Hawaiian coral reef systems | Marine Pollution Bulleting | R. Gates |
| T. S. Daly-Engel, R.D. Grubbs, K. Feldheim, B.W. Bowen, and R.J. Toonen | In multiple paternity beneficial or unavoidable? Sexual conflict, low multiple paternity and genetic diversity in the shortspine spurdog shark, Squalus mitsukurii | Marine Ecology Progress Series | R. Toonen |
| Michelle McComb,Timothy C. Tricas and Stephen M. Kajiura, | Enhanced visual fields in hammerhead sharks | Journal of Experimental Biology | T. Tricas |
| Karen P. Maruska and Timothy C. Tricas | Encoding properties of auditory neurons in the brain of a soniferous damselfish: response to simple tones and complex conspecific signals | Journal of Comparative | T. Tricas |
| O'Malley, J., 2009 | Spatial and temporal variability in growth of Hawaiian spiny lobster in the Northwestern Hawaiian Islands | Marine and Coastal Fisheries | R. Toonen |
| Christopher E. Bird1, Brenden S. Holland2, Brian W. Bowen1, and Robert J. Toonen1 | Ecological speciation in sympatric Hawaiian limpets (Cellana spp.) | PNAS | B. Bowen, R. Toonen |
| Andrew M. Wiera, Spencer V. Nyholmb, Mark J. Mandela, R. Prisca Massengo-Tiasséc, Amy L. Schaefera,1, Irina Korolevad,2, Sandra Splinter-BonDurante, Bartley Brownf, Liliana Manzellad,3, Einat Snird, Hakeem Almabrazif, Todd E. Scheetzg, Maria de Fatima Bonaldod,3, Thomas L. Casavantf, M. Bento Soaresd,3, John E. Cronanc, Jennifer L. Reedh, Edward G. Rubya, Margaret J. McFall-Ngaia,4 | Transcriptional patterns in both host and bacterium underlie a daily rhythm of structural and metabolic change in a beneficial symbiosis | Proceedings of the National Academy of Science | R. Gates |
| Yvonne L. Chan, Xavier Pochon, Marla A. Fisher, Daniel Wagner, Gregory T. Concepcion, Samuel Kahng, Robert J. Toonen, and Ruth D. Gates | Generalist dinoflagellate endosymbionts and host genotype diversity detected from mesophotic (67-100m depths) coral Leptoseris | BMC Ecology | R. Toonen |
| John E. Randall & Jennifer K. Schultz | Pictichromis dinar, a new dottyback (Perciformes: Pseudochromidae) from Indonesia | aqua | J. Schutlz |
| Weersing K & R.J. Toonen (2009) | Population genetics, larval dispersal, and connectivity in marine systems | Marine Ecology Progress Series | R. Toonen |
| Concepcion, G.T., N.R Polato, I.B. Baums & R.J. Toonen (2009) | Parallel development of microsatellite markers from four Hawaiian corals:Acropora cytherea, Fungia scutaria, Montipora capitata and Porites lobata | Conservation Genetic Resources | R. Toonen |
| Reece, J.S., B.W. Bowen, K. Joshi, V. Goz, A.F. Larson | Phylogeography of two moray eels indicates high dispersal throughout the Indo-Pacific | Journal of Heredity | B. Bowen |
| Concepcion GT, Kahng SE, Crepeau MW, Franklin EC, Coles SL, Toonen RJ (2009) | Resolving natural ranges and marine invasions in a globally distributed octocoral (Genus Carijoa) | Marine Ecology Progress Series (In Press) | R. Toonen |
| M. Hagedorn1,2 , V.L. Carter1,2, J. C. Leong2 and F. W. Kleinhans 3 | Physiology and Cryosensitivity of Coral Endosymbiotic Algae (Symbiodinium) | Cryobiology | M. Hagedorn |
| Hagedorn1,2*, Virginia L. Carter1,2, Steven Ly3, Ray M. Andrell3, Paul H. Yancey3 Jo-Ann C. Leong2, and Frederick W. Kleinhans4 | Analysis of Internal Osmolality In Developing Coral Larvae, Fungia scutaria | Physiological Biochemical Zoology | M. Hagedorn |
| Michelle R. Gaither1*, Brian W. Bowen1, Robert J. Toonen1, Serge Planes2, Vanessa Messmer2, John Earle3, D. Ross Robertson4 | Genetic consequences of introducing allopatric lineages of Bluestriped Snapper (Lutjanus kasmira) to Hawaii | Molecular Ecology | Michelle Gaither (R. Toonen) |
| Michelle R. Gaither, Robert J. Toonen, Laurie Sorenson, Brian W. Bowen | Isolation and characterization of microsatellite markers for the Crimson Jobfish, Pristipomoides filamentosus (Lutjanidae) | Conservation Genetics Resources | Michelle Gaither (R. Toonen) |
| Tracy D. Ainsworth, Rebecca Vega Thurber and Ruth D. Gates | The future of coral reefs: a microbial perspective | Trends in Ecology & Evolution | Ruth Gates |
| Kelly S. Boyle and T. Erin Cox | Courtship and spawning sounds in bird wrasse /Gomphosus varius/ and saddle wrasse /Thalassoma dupperey | Journal of Fish Biology | Tim Tricas |
| Au, Whitlow W.L., Dorian S. Houser, James J. Finneran, Wu-Jung Lee, Lois A. Talmadge, Patrick W. Moore | The acoustic field on the forehead of echolocating Atlantic bottlenose dolphins Tursiops truncatus | Journal of the Acoustical Society of America | Whitlow Au (MMRP) |
| Badgley, Brian D., Florence I.M. Thomas, Valerie J. Harwood | The Effects of Submerged Aquatic Vegetation on the Persistence of Environmental Populations of Enterococcus spp | Environmental Microbiology | Flo Thomas |
| Gochfeld, Deborah, J. | Territorial damselfishes facilitate survival of corals by providing an association defense against predators | Marine Ecology Progress Series | John Stimson |
| Kim R. Andrews, Leszek Karczmarski, Whitlow W.L. Au, Susan H. Rickards, Cynthia A. Vanderlip, Brian W. Bowen, Robert J. Toonen | Rolling stones and stable homes: Social structure, habitat diversity, and population genetics of the Hawaiian spinner dolphin (Stenella longirostris) | Molecular Ecology | Rob Toonen |
| Daly-Engel, T.S., K.M. Duncan, K.N. Holland, J.P. Coffey, H.A. Nance, R.J. Toonen, and B.W. Bowen (Submitted) | Male-mediated dispersal in a global ring species, the scalloped hammerhead shark (Sphyrna lewini) | Molecular Ecology | Kim Holland |
| Daniel H. Green1, Peter J. Edmunds1,2, Xavier Pochon3, Ruth D. Gates3 | The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands | Journal of Experimental Marine Biology and Ecology | Ruth Gates |
| Grant, W.S., F. Lecomte, B.W. Bowen. | Biogeographical contingency and the evolution of tropical anchovies Cetengraulis from temperate Engraulis | Journal of Biogeography | Brian Bowen |
| Xavier Pochon, Michael Stat, Misaki Takabayashi, Luis Chasqui, Leonard J. Chauka, Daniel D. K. Logan. Ruth D. Gates. | Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment | Journal of Phycology | Ruth Gates |
| Gretchen E. Hofmann, James P. Barry, Peter J. Edmunds, Ruth D. Gates, David A. Hutchins, Terrie Klinger and Mary A. Sewell | The Effect of Ocean Acidification on Polar, Tropical and Temperate Marine Calcifying Organisms: An Organism to Ecosystem Perspective | Annual Reviews of Ecology, Evolution and Systematics | Ruth Gates |
| Hagedorn M, Carter VL (2010) | Zebrafish Reproduction: Revisiting the Basics to Increase Sperm Cryopreservation Success (awaiting journal name - pending publication) | PLoS One | Mary Hagedorn |
| Craig, MT., Eble JE, and Bowen, BW. 2010 | Origins, ages and population histories: comparative phylogeography of endemic Hawaiian butterflyfishes (genus Chaetodon) | Journal of Biogeography | Brian Bowen |
| Dorian Houser, James Finneran, Wu-jung Lee, Lois Talmadge, Whitlow Au | The Acoustic field on the forehead of echolocating Atlantic bottlenose dolphins Tursiops truncatus | Journal of the Acoustical Society of America | Whitlow Au |
| Pochon X & Gates RD (2010) | A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'i | Molecular Phylogenetics and Evolution | Xavier Pochon (Gates Lab) |
| Supin, Alexander Ya., Paul E. Nachtigall, Marlee Breese | Target Distance-Dependent Variation of Hearing Sensitivity During Echolocation | Journal of the Acoustical Society of America | Paul Nachtigall |
| Selkoe, K., J. Watson, C. White, T. Ben-Horin, M. Iacchei, S. Mitarai, D. Siegel, S. Gaines, R. Toonen | Taking the chaos out of genetic patchiness: seascape genetics reveals ecological and oceanographic drivers of genetic patterns in three temperate reef species | Molecular Ecology | R. Toonen |
| Schultz, Jennifer K. 1*, Amy J. Marshall 2,3 and Monika Pfunder 4 | Genome-Wide Loss of Diversity in the Critically Endangered Hawaiian Monk Seal | Diversity | Jennifer Schultz |
| Lammers, Marc O., Pollyanna I. Fisher-Pool, Whitlow W.L. Au, Carl G. Meyer, Kevin B. Wong and Russell E. Brainard | Humpback whale (Megaptera novaeangliae) wintering behavior in the Northwestern Hawaiian Islands observed acoustically | Marine Ecology Progress Series (MEPS) | Marc Lammers |
| Lammers, Marc O.,Pollyanna Fisher-Pool, Whitlow Au and Carl Meyer. | Cetacean occurrence observed acoustically at Rapture Reef, French Frigate Shoals | Journal of Marine Biology | Marc Lammers |
| Au, Whit | Basis of acoustic discrimination of Chinook salmon from other salmons by echolocating /Orcinus orca/ | Journal of the Acoustical Society of America | Whitlow Au |
| Daniel Wagner, Mercer R. Brugler, Dennis M. Opresko, Scott C. France, Anthony D. Montgomery and Robert J. Toonen (in press). | Using morphometrics, in situ observations and genetic characters to distinguish amongst commercially valuable Hawaiian black coral species; a redescription of Antipathes grandis Verrill, 1928 (Antipatharia: Antipathidae) | Invertebrate Systematics | Toonen, Robert |
| Gaither, Michelle R.1*, Zoltán Szabó1, Marc Crepeau2, Christopher Bird1, Robert Toonen1 | Preservation of corals in salt-saturated DMSO buffer is superior to ethanol for PCR experiments | Coral Reefs | Toonen, Robert |
| Wagner, Daniel, Yannis P. Papastamatiou, Randall K. Kosaki, Kelly A. Gleason, Greg B. McFall, Raymond C. Boland, Richard L. Pyle & Robert J. Toonen (in press). | New records of commercially valuable black corals (Cnidaria: Antipatharia) from the Northwestern Hawaiian Islands at mesophotic depths | Pacific Science | Toonen, Robert |
| Pacini, A.F., Nachtigall, P.E., Kloepper, L.N., Linnenschmidt, M., Sogorb, A. and Matias, S. | Audiogram of a formerly stranded long-finned pilot whale (Globicephala melas) measured using auditory evoked potentials | Journal of Experimental Biology | Nachtigall, Paul |
| Jacqueline L. Padilla-Gamiño, Tina M. Weatherby, Rhian G. Waller and Ruth D. Gates | Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata | Coral Reefs | Gates, Ruth |
| Kloepper, L.N., Nachtigall, P.E. and Breese, M. 2010. | Change in echolocation click parameters with hearing loss in a false killer whale (Pseudorca crassidens) | Journal of the Acoustical Society of America 128(4) | Paul Nachtigall |
| Toonen, R.J. & R.K. Grosberg (2011). | Testing hypotheses for chaotic genetic structure: patterns of spatial and temporal genetic heterogeneity among recruits, subadults and adults of the intertidal anomuran Petrolisthes cinctipes | Phylogeography and Population Genetics in Crustacea | Toonen, Robert |
| Stimpert, A.K., Au, W.W.L., Wiley, D.N., Hurst, T.N. | Accepted. Common humpback whale (Megaptera novaeangliae) sound types for passive acoustic monitoring | Journal of the Acoustical Society of America | Au, Whitlow |
| Apprill A, Mooney TA, Lyman E, Stimpert AK, Rappé MS (2010 | Humpback whales harbour a combination of specific and variable skin bacteria | Environmental Microbiology Reports | Rappe, Mike |
| ZAC H. FORSMAN1,3, JONATHAN A. MARTINEZ1, JIM E. MARAGOS2, & ROBERT J. TOONEN1 | Resurrection of Porites hawaiiensis Vaughan, 1907: a Hawaiian coral obscured by small size, cryptic habitat, and confused taxonomy, | Zootaxa | Toonen, Robert |
| Bowen, Brian, DiBattista, Joseph, Feldheim, Kevin A. | Microsatellite DNA markers to resolve population structure and hybridization of two-closely related surgeonfish species Acunthurus nigricans & Acanthurus leucosterno | Conservation Genetic Resources | Bowen, Brian |
| Karl SA, Castro ALF, Lopez JA, Charvert-Almeida P, Burgess GH. | Phylogeography of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNA | Conservation Genetics | Karl, Stephen |
| Adam Dewan, Maya Ramey, Tim Tricas | Arginine vasotocin neuronal phenotypes, telencephalic fiber varicosities, and social behavior in butterflyfishes (Chaetodontidae): Potential similarities to birds and mammals | Hormones & Behavior | Tricas, Tim |
| Tim Tricas, Kelly Boyle | Pulse sound generation, anterior swim bladder buckling, and associated muscle activity in the pyramid butterflyfish, Hemitaurichthys polylepis | Journal of Experimental Biology | Tricas, Tim |
| Daniel Wagner, Xavier Pochon, Leslie Irwin, Robert J. Toonen & Ruth D. Gates | Azooxanthellate? Most Hawaiian black corals contain Symbiodium | Proceedings of the Royal Society B | Toonen, Robert |
| Anderson B. Mayfield, Yi-Yuong Hsiao, Tung-Yung Fan, Chii-Shiarng Chen, Ruth D. Gates | Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrix | Journal of Experimental Marine Biology and Ecology | Gates, Ruth |
| P. E. Nachtigall, R. Gisiner and M. Breese. | Decreased echolocation performance following high-frequency hearing loss in the false killer whale (Pseudorca crassidens) | Journal of Experimental Biology | Nachtigall, Paul |
| DiBattista, Joseph D., Feldheim, Kevin A. | Isolation and characterization of eight microsatellite loci in Chaetodon ornatissiumus and cross-amplification in a sympatric sister series, Chaetodon meyeri | Conservation Genetics Resources | Bowen, Brian |
| Malia Rivera, Kim Andrews, Donald Kobayashi, Johanna Wren, C. Kelly, G. K. Roderick & Robert J. Toonen | Genetic analyses and simulations of larval dispersal reveal distinct populations and directional connectivity across the range of the Hawaiian Grouper (Epinephelus quernus) | Journal of Marine Biology | Rivera, Malia |
| Michael Stat & Ruth D. Gates | Clade D Symbiodinium in seleractinian corals: a nugget of hope, a selfish of opportunist, an ominous sign, or all of the above? | Journal of Marine Biology | Gates, Ruth |
| Jennifer K. Schultz1, Joseph M. O’Malley1, Elizabeth E. Kehn2, Jeffrey J. Polovina3, Frank A. Parrish3, Randall K. Kosaki2 | Tempering expectations of recovery for previously exploited populations in a fully protected marine reserve | Journal of Marine Biology (Special Issue on Ecosystem Management of Pacific Islands) | Schultz, Jennifer |
| Jennifer K. Schultz*, Jason D Baker, Robert J. Toonen, Albert L. Harting, Brian W. Bowen | Range-wide genetic connectivity of the Hawaiian monk seal and implications for translocation | Conservation Biology | Schultz, Jennifer |
| Jennifer Salerno, Dan Reineman, Ruth D. Gates and Michael Rappe | The effect of a sub-lethal temperature elevation on the structure of bacterial communities associated with the coral Porites compressa | Journal of Marine Biology | Rappe/Gates |
| Jennifer K. Schultz*, Brenda L. Becker, Thea C. Johanos, Jessica U. Lopez, and Lizabeth Kashinsky | Dyzygotic twinning in the Hawaiian monk seal | Journal of Mammalogy | Schultz, Jennifer |
| Joseph DiBattista, Christie Wilcox, Matthew T. Craig, Luiz A. Rocha and Brian W. Bowen | Phylogeography of the Bluelined Surgeonfish, Acanthurus nigroris, reveals high connectivity and a cryptic endemic species in the Hawaiian Archipelago | Journal of Marine Biology | Brian Bowen |
| Gorospe KD, Karl SA | Small-scale spatial analysis of in situ sea temperature throughout a single coral patch reef | Journal of Marine Biology | Steve Karl |
| Z.H.Forsman 1*, G.T.Concepcion 2, R.D.Haverkort 1, R.W.Shaw 3, J.E.Maragos 4, and R.J.Toonen 1 | Ecomorph or Endangered Coral? DNA and Microstructure Reveal Hawaiian Species Complexes: Montipora dilatata/flabellata/turgescens | PLoS One | Rob Toonen |
| ZOLTÁN SZABÓ , BETHANY K. KIMOKEO, ROBERT J. TOONEN & JOHN E. RANDALL | On the status of the Hawaiian seahorses Hippocampus hilonis, H | Marine Biology Research | Rob Toonen |
| Derek J. Skillings, Christopher E. Bird and Robert J. Toonen | Gateways to Hawai'i: genetic population structure of the tropical sea cucumber Holothuria atra | Journal of Marine Biology | Rob Toonen |
| Robert J. Toonen, Kimberly R. Andrews, Iliana B. Baums, Christopher E. Bird, Gregory T. Concepcion, Toby S. Daly-Engel, Jeff A. Eble, Anuschka Faucci, Michelle R. Gaither, Matthew Iacchei, Jonathan B. Puritz, Jennifer K. Schultz, Derek J. Skillings, Molly Timmers, & Brian W. Bowen (accepted) | Defining boundaries for ecosystem-based management: A multispecies case study of marine connectivity across the Hawaiian Archipelago | Journal of Marine Biology | Rob Toonen |
| Badgley, BD, THomas, FIM and Harwood, VJ | Quantifying environmental reservoirs of fecal indicator bacteria associated with sediment and submerged aquatic vegetation | Environmental Microbiology and | Flo Thomas |
| Ariel C. Rivera-Vicente, Josiah Sewell and Timothy C. Tricas | Electrosensitive Spatial Vectors in Elasmobranch Fishes: Implications for Source Localization | Public Library of Science One | Timothy Tricas |
| Baranets, V, Forsman Z, Karl S. | Microsatellite loci for the plate-and-pillar coral, Porites rus | Conservation Genetics Resources | Steve Karl |
| Michael Stat, Christopher E. Bird, Xavier Pochon, Luis Chasqui, Leonard J. Chauka, Gregory T. Concepcion, Dan Logan, Misaki Takabayashi, Robert J. Toonen, Ruth D. Gates | Variation in Symbiodinium ITS2 sequence assemblages among coral colonies | PLoS One | R. Toonen, R. Gates |
| John E Randall,1 Joseph D. DiBattista,2 and Christie Wilcox2 | Acanthurus nigros Günther, a valid species of surgeonfish, distinct from the Hawaiian A. nigroris Valenciennes | Pacific Science | Brian Bowen |
| Karen Maruska and Timothy C. Tricas | Gonadotropin-Releasing Hormone (GnRH) Modulates Auditory Processing in the Fish Brain | Hormones and Behavior | Timothy Tricas |
| Apprill, A and Rappe, MS. | Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USA | Aquatic Microbial Ecology | Mike Rappe |
| Hédouin, L., Metian M and Gates RD | Ecotoxicological approach for assessing the contamination of a Hawaiian coral reefecosystem (Honolua Bay, Maui) by metals and a metalloid | Marine Environmental Research | Ruth Gates |
| Adam Kabir Dewan and Timothy C. Tricas | Arginine vasotocin neuronal phenotypes and their relationship to aggressive behavior in the territorial monogamous multiband butterflyfish, Chaetodon multicinctus | Brain Research | Tim Tricas |
| Jonathan B. Puritz and Robert J. Toonen | Coastal Pollution Limits Pelagic Larval Dispersal | Nature Communications | Rob Toonen |
| Eble, J.A., L.S. Sorenson, Y.P. Papastamatiou, L. Basch, R.J. Toonen, B.W. Bowen (in press) | Escaping paradise: Larval export from Hawaii in an Indo-Pacific reef fish, the Yellow Tang | Marine Ecology Progress Series | Brian Bowen |
| Christopher E. Bird*, Brenden S. Holland, Brian W. Bowen, and Robert J. Toonen | Diversification of sympatric broadcast-spawning limpets (Cellana spp.) within the Hawaiian archipelago | Molecular Ecology | Brian Bowen and Rob Toonen |
| Julie N. Oswald, W. W. L. Au and F. Dunnebeir | Minke whale (Balaenoptera acutorostrata) boings detected at the Station Aloha Cabled Observatory | Journal of the Acoustical Society of America | Whitlow Au |
| Takabayashi M, Adams LM, Pochon X, Gates RD | Diversity of Free-Living Symbiodinium in surface water and sediment of Hawaii and Florida | Coral Reefs | Ruth Gates |
| Adam K. Dewan and Timothy C. Tricas | Cytoarchitecture of the telencephalon in the coral reef multiband butterflyfish (Chaetodon multicinctus) | The Journal of Comparitive Neurology | Tim Tricas |
| Adam K. Dewan and Timothy C. Tricas | Cytoarchitecture of the diencephalon in the coral reef multiband butterflyfish (Chaetodon multicinctus) | The Journal of Comparitive Neurology | Tim Tricas |
| Daniel Wagner, Rhian G. Waller and Robert J. Toonen | Sexual reprorduction of Hawaiian black corals, with a review of reproductive processes within the order Antipatharia (Cnidaria: Anthozoa: Hexacorallia) | Invertebrate Biology | Rob Toonen |
| Edmunds PJ, Putnam HM, Nisbet RM, and Muller EB | Benchmarks in organism performance and their use in comparative analyses | Oecologia | Ruth Gates |
| Grottoli AG, Rodrigues LJ (2011) | Bleached Porites compressa and Montipora capitata corals catabolize 13C-enriched lipids | Coral Reefs | Paul Jokiel |
| O'Malley, J.M. | Spatiotemporal Variation in the Population Ecology of Scaly Slipper Lobsters Scyllarides squammosus in the Northwestern Hawaiian Islands | Marine Biology | Robert Toonen |
| Adam K. Dewan and Timothy C. Tricas | Arginine vasotocin neuronal phenotypes and their relationship to aggressive behavior in the territorial monogamous multiband butterflyfish, Chaetodon multicinctus | Brain Research | Tim Tricas |
| Gates, RD, Ainsworth, TD | The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals | Journal of Experimental Marine Biology and Ecology | Ruth Gates |
| Bird, Christopher | Morphological and Behavioral Evidence for Adaptive Diversification of Sympatric Hawaiian Limpets (Cellana spp.) | Integrative and Comparative Biology | Rob Toonen |
| Christopher E. Bird, Robert J. Toonen, Stephen E. Karl , Peter E. Smouse | Detecting and Measuring Genetic Differentiation | Crustacean Issues: Phylogeography and Population Genetics in Crustacea | Rob Toonen |
| Jennifer Schultz | Population Genetics of the Monk Seals (Genus Monachus): a Review | Aquatic Mammals | Jennifer Schultz |
| Aude F. Pacini, Paul E. Nachtigall, Christopher T. Quintos, T. David Schofield, Dera A. Look, Gregg A. DVM Levine, and Jason P. Turner | Audiogram of a stranded Blainville's beaked whale (Mesoplodon densirostris) measured using auditory evoked potentials | Journal of Experimental Biology | Paul Nachtigall |
| Songhai Li, Paul E. Nachtigall and Marlee Breese. | Dolphin hearing during echolocation: evoked potential responses in an Atlantic bottlenose dolphin | Journal of Experimental Biology | Paul Nachtigall |
| Michelle R. Gaither, Brian W. Bowen, Tiana-Rae Bordenave, Luiz A. Rocha, Stephen J. Newman, Juan Arango Gomez, Lynne van Herwerden, and Matthew T. Craig | Phylogeography of the reef fish Cephalopholus argus (Epinephelidae) indicates Pleistocene isolation across the Indo-Pacific Barrier with contemporary overlap in the Coral Triangle | BMC Evolutionary Biology | Brian Bowen |
| Eiler, Alexander, D. H. Hayakawa, and M. S. Rappe | Non-random assembly of bacterioplankton communities in the subtropical North Pacific Ocean | Frontiers in Aquatic Microbiology | Mike Rappe |
| Curtis, C., B.S. Stewart, and S.A. Karl | Genetically effective population sizes of Antarctic seals estimated from nuclear genes | Conservation Genetics | Steve Karl |
| Daley-Engel TS, Randall JE and Bowen BW | Is the great barracuda (Sphyraena barracuda) a reef fish or pelagic fish? | Marine Biology | Brian Bowen |
| Work TM, Forsman ZH, Szabo Z, Lewis TD, Aeby GS, Toonen RJ | Montiporiasis, a tissue-loss disease of Montipora capitata (Cnidaria; Scleractinia) consistent with interspecific chimerism and somatic cell parasitism. | PLoS One | Forsman, Zac |
| Supin, A.Ya., Nachtigall, P.E. and Breese, M. | Interaction of emitted sonar pulses and simulated echoes in a false killer whale: An evoked-potential study | Journal of the Acoustical Society of America | Nachtigall, Paul |
| Kuulei S. Rodgers, Michael H. Kido, Paul L. Jokiel, Tim Edmonds, Eric K. Brown | Use of integrated landscape indicators to evaluate the health of linked watersheds and coral reef environments in the Hawaiian Islands | Environmental Management | Rodger, Kuulei |
| M.C. Ross, Y.Stender, D. White, G.S. Aeby | Outbreak of the coral disease, Montipora White Syndrome in Maui, Hawaii | Coral Reefs | Aeby, GS |
| Grote, J., C. Bayindirli, K. Bergauer, P. Carpintero de Moraes, H. Chen, L. D'Ambrosio, B. Edwards, B. Fernández-Gómez, M. Hamisi, R. Logares, D. Nguyen, Y. M. Rii, E. Saeck, C. Schutte, B. Widner, M. J. Church, G. F. Steward, D. M. Karl, E. F. DeLong, J. M. Eppley, S. Schuster, N. C. Kyrpides, and M. S. Rappé | Complete genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria | Standards in Genomic Sciences | Rappe, Michael |
| Erik C. Franklin, Michael Stat, Xavier Pochon, Hollie M. Putnam, Ruth D. Gates | Rapid development of a hybrid web application for synthesis science of Symbiodinium with Google Apps | Proceedings of Environment Information Management 2011 Conference | Franklin, Erik |
| FORSMAN, Z.H., KIMOKEO, B.K., BIRD, C.E., HUNTER, C.L. & TOONEN, R.J. | Coral farming: species specific effects of light, water motion and artificial foods | Journal of the Marine Biological Assn | Forsman, Zac |
| Randall, J.E., J.D. DiBattista | Etrumeus makiawa, a new species of Round Herring (Clupeidae: Dussumierinae) from the Hawaiian Islands | Pacific Science | Bowen, Brian |
| Selkoe, K.A. & R.J. Toonen | Review: Marine Connectivity: a new look at pelagic larval duration and genetic metrics of dispersal | Marine Ecology Progress Series | Toonen, Rob |
| Lisa M. Munger, Marc O. Lammers, Pollyanna Fisher-Pool, and Kevin Wong | Humpback whale (Megaptera novaeangliae) song occurrence at American Samoa in long-term passive acoustic recordings, 2008-09 | Endangered Species Research | Lammers, Marc |
| Hughes A.D., Grottoli A. G. | Critical importance of heterotrophy in bleached corals throughout long-term recovery | Nature | Jokiel, Paul |
| Franklin EC, Stat M, Pochon X, Putnam HM, Gates RD | GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses | Molecular Ecology Resources | Franklin, Erik |
| Megan J. Huggett, Darin H. Hayakawa and Michael S. Rappé. | Permanent draft genome sequence of strain HIMB624, a cultured representative from the OM43 clade of marine Betaproteobacteria | Standards in Genomic Sciences | Rappe, Michael |
| M(ichael). S. Wollenberg and E(dward). G. Ruby | Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations | ISME Journal | Gates, Ruth |
| D. W. Lemonds, L. N. Kloepper, P. E. Nachtigall, W. W. L. Au and S. A. Vlachos, and B. K. Branstetter | A re-evaluation of auditory filter shape in delphinid odontocetes: Evidence of constant-bandwidth filters | Journal of the Acoustical Society of America | Nachtigall, Paul |
| Karl, SA, Castro ALF, and Garla RC | Population genetics of the nurse shark (Ginglymostoma cirratum) in the western Atlantic | Marine Biology | Karl, Steve |
| Kelly S. Boyle & Timothy C. Tricas | Sound production in the longnose butterflyfishes (genus Forcipiger): cranial kinematics, muscle activity and honest signals | Journal of Experimental Biology | Tricas, Timothy |
| Nicholas M. Whitney, William D. Robbins, Jennifer K. Schultz, Brian W. Bowen and Kim N. Holland | Oceanic dispersal in a sedentary reef shark (Triaenodon obesus): genetic evidence for extensive connectivity without a pelagic larval stage | Journal of Biogeography | Bowen, Brian |
| Whitlow W. L. Au, Brian Branstetter, Patrick W. Moore and James J. Finneran | The biosonar field around an Atlantic bottlenose dolphin (Tursiops truncatus) | Journal of the Acoustical Society of America | Au, Whitow |
| O'Malley, J.M., J.C. Drazen, B.N. Popp, E. Grier, and R.J. Toonen | Spatial Variability in Growth and Prey Availability of Lobsters in the Northwestern Hawaiian Islands | Marine Ecology Progress Series | Toonen, Rob |
| Kloepper, L.N., Nachtigall, P.E., Quintos, C., and Vlachos, S.A. | Single-lobed frequency-dependent beam shape in an echolocating false killer whale (Pseudorca crassidens) | Journal of the Acoustical Society of America | Nachtigall, Paul |
| Schnitzler, Christine., Lea L. Hollingsworth, David A. Krupp and Virginia M. Weis | Elevated temperature impairs onset of symbiosis and reduces survivorship in larvae of the Hawaiian coral, Fungia scutaria | Marine Biology | Krupp, Dave |
| Gaither, Michelle, Jones, Shelley, Kelley, Christopher, Newman, Stephen, Sorenson, Laurie, Bowen, Brian | High connectivity in the deepwater snapper Pristipomoides filamentosus (Lutjanidae) across the Indo-Pacific with isolation of the Hawaiian Archipelago | PLoS One | Bowen, Brian |
| Gates, RD, Padilla-Gamino, Jacqueline | Spawning dynamics in the Hawaiian reef building coral Montipora capitata | Marine Ecology Progress Series | Gates, Ruth |
| Thomas Krueger and Ruth D. Gates | Cultivating endosymbionts - Host environmental mimics support the survival of Symbiodinium C15 ex hospite | Journal of Experimental Marine Biology and Ecology | Gates, Ruth |
| Xavier Pochon, Hollie Putnam, Fabien Burki, and Ruth Gates. | Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus Symbiodinium | PLoS One | Gates, Ruth |
| Songhai Li, Paul E. Nachtigall, Marlee Breese, and Alexander Ya. Supin | Hearing sensation level of emitted biosonar clicks in an echolocating Atlantic bottlenose dolphin | PLoS One | Nachtigall, Paul |
| Mary Hagedorn, Virginia Carter, Kelly Martorana, Malia K. Paresa, Jason Acker, Iliana B. Baums, Eric Borneman, Michael Brittsan, Michael Byers, Michael Henley, Michael Laterveer, Jo-Ann Leong, Megan McCarthy, Stuart Meyers, Brian D. Nelson, Dirk Petersen, Terrence Tiersch, Rafael Cuevas Uribe, Erik Woods and David Wildt | Preserving and Using Germplasm and Dissociated Embryonic Cells for Conserving Caribbean and Pacific Coral | PLoS One | Hagedorn, Mary |
| Robert van Woesik, Erik C. Franklin, Jennifer O’Leary, Tim R. McClanahan, James S. Klause, Ann F. Budd | Hosts of the Plio-Pleistocene past reflect modern-day coral vulnerability | Proceedings of the Royal Society B: Biological Sciences | Franklin, Erik |
| D. Wagner, R.G. Waller, A.D. Montgomery, C.D. Kelley and R.J. Toonen | Sexual reproduction of the Hawaiian black coral Antipathes griggi (Cnidaria: Antipatharia) | Coral Reefs | Toonen, Rob |
| Karl, SA, Toonen RJ, Grant WS, and Bowen BW | Common misconceptions in molecular ecology: Is it time for a new modern synthesis? | Molecular Ecology | Karl, Steve |
| Whitlow W. L. Au and Stephen W. Martin | Why dolphin biosonar performs so well in-spite of mediocre “equipment” | Sonar, Radar and Navigation | Au, Whitlow |
| Laura N. Kloepper, Paul E. Nachtigall, Megan J. Donahue and Marlee Breese. | Active echolocation beam focusing in the false killer whale, Pseudorca crassidens (2011) | Journal of Experimental Biology | Nachtigall, Paul |
| Jonathan B. Puritz, Jason A. Addison, and Robert J. Toonen | Next-Generation Phylogeography: A targeted approach for multilocus sequencing of non-model organisms | PLoS One | Toonen, Rob |
| Karl, SA and Hayes KA. | Extreme population subdivision in the Crown Conch | Journal of Heredity | Karl, Steve |
| M. Hagedorn, M. McCarthy, V.L Carter, S.A. Meyers | Oxidative Stress in Zebrafish (Danio rerio) Sperm | PLoS One | Hagedorn, Mary |
| Christopher E. Bird1, Iria Fernandez-Silva, Derek J. Skillings, Robert J. Toonen | Sympatric speciation in the post “Modern Synthesis” era of evolutionary biology | Evolutionary Biology | Toonen, Rob |
| DiBattista, Joseph, Ellen Waldrop, Brian Bowen, Jenny Schultz, Michelle Gaither, Richard Pyle and Luiz A. Rocha. | Twisted sister species of Pygmy Angelfishes: Discordance between taxonomy, coloration, and phylogenetics | Coral Reefs | Bowen, Brian |
| DiBattista, John E. Randall, Brian W. Bowen | Review of the round herrings of the genus Etrumeus (Clupeidae: Dussumieriinae) of Africa, with descriptions of two new species | Cybium | Bowen, Brian |
| Wainwright BJ, Arlyza IS, and Karl SA. | Eighteen microsatellite loci for the Crown-of-Thorns starfish, Acanthaster planci | Conservation Genetics Resources | Karl, Steve |
| Wainwright BJ, Arlyza IS, and Karl SA (2012) | Development of 15 microsatellite loci for Protoreaster nodosus (Echinodermata Asteroidea) | Conservation Genetic Resources | Karl, Steve |
| Jacqueline L. Padilla-Gamino, Xavier Pochon, Chris E. Bird, Greg T. Concepcion and Ruth D. Gates. | From parent to gamete: Vertical transmission of Symbiodinium (Dinophyceae) ITS2 sequence assemblages in the reef building coral Montipora capitata | PLoS One | Gates, Ruth |
| Wainwright BJ, Arlyza IS, and Karl SA | Development of eighteen polymorphic microsatellite loci for the banded coral shrimp, Stenopus hisipidus | Conservation Genetics Resources | Karl, Steve |
| Paul L. Jokiel, Ku‘ulei S. Rodgers, Stephen A. Karl | Genetic structure of a reef coral population (Porites rus): comparison of grafting vs. a molecular genetic technique | Marine Ecological Progress Series | Rodgers, Ku'ulei |
| Michael Stat, Andrew C. Baker, David G. Bourne, Adrienne M. S. Correa, Zac Forsman, Megan Huggett, Xavier Pochon, Derek Skillings, Rob Toonen, Madeleine J.H. van Oppen and Ruth D. Gates | Molecular Delineation of Species in the Coral Holobiont | Advances in Marine Biology | Gates, Ruth |
| Wainwright BJ, Arlyza IS, Karl SA. | Isolation and characterization of nineteen microsatellite loci for the collector sea urchin, Tripneustes gratilla | Conservation Genetics Resources | Karl, Steve |
| Whitlow W. L. Au, Brain Branstetter, Patrick Moore and James Finneran. | Dolphin biosonar signals measured at extreme off-axis angles: Insights to sound propagation in the head | Journal of the Acoustical Society of America | Au, Whitlow |
| Gaither, Michelle R., Randall, John E. | Reclassification of the Indo-Pacific Hawkfish Cirrhitus pinnulatus (Forster.) | Smithiana Bulletin | Bowen, Brian |
| Lemond, D., Au, W. W. L., Vlachos, S., and Nachtigall, P. | High-frequency auditory filter shape for the Atlantic bottlenose dolphin | Journal of the Acoustical Society of America | Au, Whitlow |
| Jungbluth, S. P., J. Grote, H.-T. Lin, J. P. Cowen, and M. S. Rappé (2012) | Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank | ISME Journal | Rappe, Mike |
| Jonathan B. Puritz, Carson C. Keever, Jason A. Addison, Maria Byrne, Michael W. Hart, Richard K. Grosberg and Robert J. Toonen | Extraordinarily rapid life history divergence between Cryptasterina sea star species | Proceedings of the Royal Society B: Biological Sciences | Toonen, Rob |
| Michelle R. Gaither (corresponding author), Robert J. Toonen, Brian W. Bowen | Coming out of the starting blocks: Extended lag time rearranges genetic diversity in introduced marine fishes of Hawaiʻi. | Proceedings of the Royal Society of London | Bowen, Brian |
| A. Ya Supin, Paul E. Nachtigall and Marlee Breese | A whale better adjusts the biosonar to ordered rather than to random changes in the echo parameters | Journal of the Acoustical Society of America | Nachtigall, Paul |
| Joseph D. DiBattista, Luiz A. Rocha, Matthew T. Craig, Kevin A. Feldheim, Brian W. Bowen. | Phylogeography of Two Closely Related Indo-Pacific Butterflyfishes Reveals Divergent Evolutionary Histories and Discordant Results from mtDNA and Microsatellites | Journal of Heredity | Bowen, Brian |
| Weitzman, JS1*, Aveni-Deforge, K2, Koseff, JR1, and Thomas, FIM2 | Uptake of dissolved inorganic nitrogen by shallow seagrass communities 1 exposed to wave-driven unsteady flow | Marine Ecology Progress Series | Thomas, Flo |
| Hui Ou, Whitlow Au and Julie Oswald | A non-spectrogram-correlation method of automatically detecting minke whale boings | Journal of the Acoustical Society of America | Au, Whitlow |
| Fabina NS, Putnam HM, Stat M, Franklin EC, and Gates RD | Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium communities | PLoS One | Gates, Ruth |
| Putnam HM, Stat M, Pochon X and Gates RD | Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals | Proceedings of the Royal Society London B | Gates, Ruth |
| Jacqueline L. Padilla-Gamiño, Katharine M. Hanson, Michael Stat and Ruth D. Gates | Phenotypic plasticity of the coral Porites rus: acclimatization responses to a turbid environment | Journal of Experimental Marine Biology and Ecology | Gates, Ruth |
| Apprill, A., H. Q. Marlow, M. Q. Martindale, and M. S. Rappé | The specificity of associations between bacteria and the coral Pocillopora meandrina during early development | Applied and Environmental Microbiology | Rappe, Mike |
| Wainwright, BJ, Arlyza IS, Karl SA | Isolation and characterization of twenty-three polymorphic microsatellite loci for Linckia laevigata | Conservation Genetics Resources | Karl, Steve |
| Michelle R. Gaither1,2 and John E. Randall3 | On the validity of the cirrhitid fish genus Itycirrhitus | Aqua, International Journal of Ichthyology | Bowen, Brian |
| Mary Hagedorn1,2*, Ann Farrell1,2 and Virginia L. Carter1,2 | Cryobiology of Coral Fragments | Cryobiology | Hagedorn, Mary |
| Edmunds, P. J., Putnam, H. M., and Gates, R. D. | Photophysiological consequences of vertical stratification of Symbiodinium in tissue of the coral Porites lute | Biological Bulletin | Gates, Ruth |
| Jacqueline L. Padilla-Gamino, Robert R. Bidigare, Daniel J. Barshis, Ada Alamaru, Laetitia Hedouin, Xavier Hernandez-Pech, Frederique Kandel, Sherril Leon Soon, Melissa S. Roth, Lisa J. Rodrigues, Andrea A. Grottoli, Claudia Portocarrero, Stephanie A. Wagenhauser, Fenina Buttler, Ruth D. Gates | Are all eggs created equal? A case study from the Hawaiian reef-building coral Montipora capitata | Coral Reefs | Gates, Ruth |
| Puritz JB & RJ Toonen | Next-generation sequencing for high-throughput molecular ecology: a step-by-step protocol for targeted multilocus genotyping by pyrosequencing | Methods in Molecular Biology | Toonen, Rob |
| Fernandez-Silva I & RJ Toonen | Less is more: Optimizing selection of microsatellite loci from 454 pyrosequencing via post-sequencing bioinformatic analyses | Methods in Molecular Biology | Toonen, Rob |
| Alison K. Stimpert, David Mattila, Eva-Marie Nosal, Whitlow W. L. Au | Tagging young humpback whale calves: methodology and diving behavior | Endangered Species Research | Au, Whitlow |
| Mary Hagedorn, Ann Farrell, Virginia Carter, Nikolas Zuchowicz, Erika Johnston, Jacqueline Padilla- Gamiño, Jo-Ann Leong | Do Toxins in Montipora capitata Eggs and Larvae Aid in Competition? | PLoS One | Hagedorn, Mary |
| AB Mayfield, P-H Chan, HM Putnam, C-S Chen and T-Y Fan | The effects of a variable temperature regime on the physiology of the reef-building coral Seriatopora hystrix: results from a laboratory-based reciprocal transplant | Journal of Experimental Biology | Gates, Ruth |
| Kelly S. Boyle, Adam K. Dewan, and Timothy C. Tricas | Fast Drum Strokes: Novel and Convergent Features ofSonic Muscle Ultrastructure, Innervation, and Motor Neuron Organization in the Pyramid Butterflyfish (Hemitaurichthys polylepis) | Journal of Morphology | Tricas, Tim |
| Wainwright, BJ, Arlyza IS, Karl SA | Isolation and characterization of twenty-six, polymorphic microsatellite loci for the tropical sea urchin, Colobocentrotus atratus | Conservation Genetic Resources | Karl, Steve |
| Andrews, Kimberly R.; Perrin, William F.; Oremus, Marc; Karczmarski, Leszek; Bowen, Brian W.; Puritz, Jonathan B.; Toonen, Robert J | The evolving male: Spinner dolphin (Stenella longirostris) ecotypes are divergent at Y chromosome but not mtDNA or autosomal markers | Molecular Ecology | Bowen, Brian |
| Hédouin, L and Gates RD | Assessing fertilization success of the coral Montipora capitata under copper exposure: does the night of spawning matter | Marine Pollution Bulletin | Gates, Ruth |
| Halpern BS, Selkoe KA, White C, Albert S, Aswani S and Lauer M | Marine protected areas and resilience to sedimentation in the Solomon Islands | Coral Reefs | Toonen, Rob |
| Joseph D. DiBattista1*, Michael L. Berumen2,3, Michelle R. Gaither4, Luiz A. Rocha4, Jeff A. Eble5, J. Howard Choat6, Matthew T. Craig7, Derek J. Skillings1 and Brian W. Bowen1 | After continents divide: Comparative phylogeography of reef fishes from the Red Sea and Indian Ocean | Journal of Biogeography | Bowen, Brian |
| Putnam HM, Mayfield AB, Fan TY, CS Chen and RD Gates | The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2 | Marine Biology | Gates, Ruth |
| Franklin EC, Jokiel PL, Donahue MJ. | Predictive modeling of coral distribution and abundance in the Hawaiian Islands | Marine Ecology Progress Series | Jokiel, Paul |
| John E. Randall1 and Joseph D. DiBattista2 | Chromis fieldi, a new species of damselfish (Pomacentridae) from the Indian Ocean | Aqua, International Journal of Ichthyology | Bowen, Brian |
| Briggs, J.C., B.W. Bowen. | Evolutionary patterns: Marine shelf habitat | Journal of Biogeography | Bowen, Brian |
| I. Fernandez-Silva, B. N. Snelgrove, B. W. Bowen | Twelve microsatellite DNA markers to resolve population structure of the Yellow-Striped Goatfish Mulloidichthys flavolineatus (family Mullidae) | Conservation Genetics Resources | Bowen, Brian |
| Weitzman, j, Aveni-deForge, Koseff, J and F.I.M. Thomas | Uptake if dissolved inorganic nitrogen by shallow Seagrass communitities under non steady flow | Marine Ecology Progress Series | Thomas, Flo |
| Fernandez-Silva I., Whitney J., Wainwright B., Andrews K. R., Ylitalo-Ward H., Bowen B. W., Toonen R. J., Goetze E., Karl S. A. | Microsatellites for next-generation ecologists: A post-sequencing bioinformatics pipeline | PLoS One | Toonen, Robert |
| Michelle R. Gaither, Greta Aeby, Matthias Vignon, Yu-ichiro Meguro, Mark Rigby, Christina Runyon, Robert J. Toonen, Chelsea L. Wood, Brian W. Bowen | An invasive fish and the time-lagged spread of its parasite across the Hawaiian archipelago | PLoS One | Toonen, Robert |
| Yuko Stender, Paul Jokiel, Ku‘ulei Rodgers | Changes in the Marine Biota of Pelekane Bay, Hawai‘i over Three Decades | Pacific Science | Jokiel, Paul |
| Louise T. Kregting, Anna L. Bass, Òscar Guadayol,Philip O. Yund, Florence I. M. Thomas | Effects of oscillatory flow on fertilization in the green sea urchin Strongylocentrotus droebachiensis | Limnology and Oceanography | Thomas, Flo |
| Mary Hagedorn, Virginia Carter, Nikolas Zuchowicz, Micaiah Phillips, Elizabeth Vallen, Frederick W. Kleinhans, Kelly Peterson, Paul Yancey | Trehalose Is a Chemical Attractant in the Establishment of Coral Symbiosis | PLoS One | Hagedorn, Mary |
| Wiener CS & Wagner D | Sailing through time: a historical examination of the explorations and investigations of the Papahānaumokuākea Marine National Monument | Atoll Research Bulletin | Weiner, Carlie |
| Wainwright B., I. Arlyza, S.A. Karl | Isolation and characterization of twenty-one polymorphic microsatellite loci for Polycarpa aurata using third generation sequencing | Conservation Genetics Resources | Karl, Steve |
| Bowen, B.W., L.A. Rocha, R.J. Toonen, S.A. Karl, J.A. Eble, D. Skillings, M.R. Gaither, J.D. DiBattista, M.T. Craig, C.E. Bird. | Origins of tropical marine biodiversity | Trend in Ecology and Evolution | Bowen, Brian |
| Stat M, Pochon X, Franklin EC, Bruno JF, Casey KS, Selig ER, Gates RD | The distribution of the thermally tolerant symbiont lineage (Symbiodinium clade D) in corals from Hawaii: correlations with host and the history of ocean thermal stress | Ecology and Evolution | Gates, Ruth |
| Matthew Iacchei, Tal Ben-Horin, Kim Selkoe, Chris Bird, Francisco Garcia Rodriguez, Rob Toonen | Combined analyses of kinship and FST suggest potential drivers of chaotic genetic patchiness in high gene-flow populations | Molecular Ecology | Toonen, Robert |
| Whitlow Au, Giacomo Giorli, Jessica Chen, Adrienne Copeland, Marc Lammers, Michael Richlen, Susan Jarvis, Ronald Morrissey, David Moretti and Holger Klinck | Nighttime Foraging by Deep Diving Echolocating Odontocetes off the Hawaiian Islands of Kauai and Ni’iahu as Determined by Passive Acoustic Monitors | Journal of the Acoustical Society of America | Au, Whitlow |
| Gorospe, KD and Karl SA | 2013 Genetic Relatedness Does Not Retain Spatial Pattern Across Multiple Spatial Scales: Dispersal and Colonization in the Coral, Pocillopora damicornis | Molecular Ecology | Karl, Steve |
| Michelle R. Gaither, Brian W. Bowen and Robert J. Toonen | Population structure in the native range predicts the spread of introduced marine species | Proceedings of the Royal Society B: Biological Sciences | Bowen, Brian |
| Stephen J. Levas, Andréa G. Grottoli, Adam Hughes, Christopher L. Osburn, and Yohei Matsui | Physiological and biogeochemical traits of bleaching and recovery in the mounding species of coral Porites lobata: implications for resilience in mounding corals | PLoS One | Jokiel, Paul |
| Ku’ulei S. Rodgers1, Paul L. Jokiel1, Eric K. Brown2, Skippy Hau3, and Russell Sparks3 | Hawai‘i Coral Reef Assessment and Monitoring Program: Over a Decade of Change in Spatial and Temporal Dynamics in Coral Reef Communities | Pacific Science | Jokiel, Paul |
| Koi Lorance, Ku‘ulei S. Rodgers, and Paul L. Jokiel | Monitoring of Coral Relocation from a Boat Channel to a South Kāne‘ohe Bay, O‘ahu, Hawai‘i Patch Reef over an Eight Year Period | Pacific Science | Jokiel, Paul |
| Baums, IB, LS Godwin, EC Franklin, DB Carlon & RJ Toonen | Discordant population expansions in four species of coral-associated, Pacific hermit crabs (Anomura: Diogenidae) linked to habitat availability resulting from sea level change | Journal of Biogeography | Toonen, Robert |
| Wainwright B., I. Arlyza, S.A. Karl | Isolation and characterization of eighteen polymorphic microsatellite loci for the topical seagrass, Syringodium isoetifolium | Conservation Genetics Resources | Karl, Steve |
| Wainwright B., I. Arlyza, S.A. Karl | Isolation and characterization of twenty-four polymorphic microsatellite loci for the topical seagrass, Thalassia hemprichii | Conservation Genetics Resources | Karl, Steve |
| Paul E. Nachitigall, Alexander Ya. Supin | A false killer whale reduces its hearing sensitivity when a loud sound is preceded by a warning | The Journal of Experimental Biology | Nachtigall, Paul |
| Michael. P. Lesser, Michael. Stat and Ruth. D. Gates | The endosymbiotic dinoflagellates (Symbiodinium sp.) of corals are parasites and mutualists | Coral Reefs | Gates, Ruth |
| Nicholas S Fabina, Hollie M Putnam, Erik C Franklin, Michael Stat, and Ruth D Gates | Symbiotic specificity, association patterns, and function determine community responses to global changes: Defining critical research areas for coral-Symbiodinium symbioses | Global Change Biology | Gates, Ruth |
| Forsman ZH, Johnston EC, Brooks AJ, Adam TC, Toonen RJ | Genetic evidence for regional isolation of Pocillopora corals from Moorea | Oceanography | Toonen, Robert |
| Helen, Ou, Whitlow Au, Sofie Van Parijs, Erin Oleson and Shannon Rankin | Discrimination of frequency-modulated Baleen whale downsweep calls with overlapping frequencies | Journal of the Acoustical Society of America | Au, Whitlow |
| Denise M. Yost , Li-Hsueh Wang, Tung-Yung Fan, Chii-Shiarng Chen, Raymond W. Lee, Emilia Sogin and Ruth D. Gates | Diversity in skeletal architecture influences biological heterogeneity and Symbiodinium habitat in corals | Zoology | Gates, Ruth |
| Christopher P. Jury, Florence I. M. Thomas, Marlin J. Atkinson, and Robert J. Toonen | Buffer capacity, ecosystem feedbacks, and seawater chemistry under global change | Water | Thomas, Flo |
| Carson C. Keever, Jonathan B. Puritz, Jason A. Addison, Maria Byrne, Richard K. Grosberg, Robert J. Toonen and Michael W. Hart | (2013) Shallow gene pools in the high intertidal: extreme loss of genetic diversity in viviparous sea stars (Parvulastra) | Biology Letters | Toonen, Robert |
| Louise T. Kregting, Anna L. Bass, Òscar Guadayol, Philip O. Yund, Florence I. M. Thomas | Effects of oscillatory flow on fertilization in the green sea urchin Strongylocentrotus droebachiensis | PLoS One | Thomas, Flo |
| Patricia Marti-Puig, Zac H Forsman, Roxanne D Haverkort-Yeh, Ingrid SSKnapp, James E. Maragos, Robert J. Toonen | Extreme phenotypic polymorphism in the coral genus Pocillopora; micro-morphology corresponds to mitochondrial groups, while colony morphology does not | Marine Science | Toonen, Robert |
| Christopher E. Bird, Erik C. Franklin, Celia M. Smith and Robert J. Toonen | Between tide and wave marks: a unifying model of physical zonation on littoral shores | PeerJ | Toonen, Robert |
| Briggs, RA, Padilla-Gamino, JL, Bidigare, RR, Gates, RD and Ruttenberg, KC | Impact of coral spawning on the biogeochemistry of a Hawaiian reef | Estuarine Coastal Shelf Science | Gates, Ruth |
| Iacchei, M. I., and R.J. Toonen | Caverns, compressed air, and crustacean connectivity: insights into Hawaiian spiny lobster populations | Proceedings of the Curaçao AAUS/ESDP Joint International Scientific Diving Symposium. Dauphin Island: American Academy of Underwater Sciences | Toonen, Robert |
| Marloes Poortvliet, Gary C. Longo, Kimberly Selkoe, Paul H. Barber, Crow White, Jennifer E. Caselle, Alejandro Perez-Matus, Steven D. Gaines & Giacomo Bernardi | Phylogeography of the California sheephead, Semicossyphus pulcher: the role of deep reefs as stepping stones and pathways to antitropicality | Ecology and Evolution | Toonen, Robert |
| Whitlow W. L. Au, Giacomo Giorli, Jessica Chen, Adrienne Copeland, Marc O. Lammers and Michael Richlen | Presence and season variation of deep diving foraging odontocetes around Kauai, Hawaii using remote autonomous acoustic recorders | Journal of the Acoustical Society of America | Au, Whitlow |
| Florence I. M. Thomas1*, Louise T. Kregting1,2, Brian D. Badgley3, Megan J. Donahue1, Philip O. Yund2 | FERTILIZATION IN A SEA URCHIN IS NOT ONLY A WATER COLUMN PROCESS: EFFECTS OF WATER FLOW ON FERTILIZATION NEAR A SPAWING FEMALE | Marine Ecology Progress Series | Thomas, Flo |
| Jungbluth, S.P., Johnson, L.G.H., Cowen, J.P., and Rappé, M.S | Data report: microbial diversity in sediment near Grizzly Bare Seamount in Holes U1363B and U1363G | Proceedings of the Integrated Ocean Drilling Program | Rappe, Michael |
| Robert J. Toonen, Jonathan B. Puritz, Zac H. Forsman, Jonathan L. Whitney, Iria Fernandez-Silva, Kimberly R. Andrews and Christopher E. Bird | ezRAD: a simplified method for genomic genotyping in non-model organisms | PeerJ | Toonen, Robert |
| Justin Baumann, Andrea G. Grottoli, Adam D. Hughes, Yohei Matsui | The acquisition and allocation of carbon to lipids of bleached and healthy Hawaiian corals | MEPS (Marine Ecology Progress Series) | Gates, Ruth |
| Guadayol, Oscar, Silbiger, Nyssa, Donahue, Megan, Thomas, Flo | Patterns in temporal variability of temperature, oxygen and pH along an environmental gradient in a coral reef | PLoS One | Donahue, Megan |
| Iacchei, M., J.M. O'Malley, R.J. Toonen | After the gold rush: population structure of spiny lobsters in Hawai'i following a fishery closure and the implications for contemporary spatial management | Bulletin of Marine Science | Toonen, Robert |
| Szabo Z, Snelgrove B, Craig MT, Rocha LA, Bowen, BW (2014) | Phylogeography of the Manybar Goatfish, Parupeneus multifasciatus, reveals isolation of the Hawaiian Archipelago and a cryptic species in the Marquesas Islands | Bulletin of Marine Science | Bowen, Brian |
| Concepcion GT, Baums IB & Toonen RJ (2014) | Regional population structure of Montipora capitata across the Hawaiian Archipelago | Bulletin of Marine Science | Toonen, Robert |
| Michelle Gaither, Jennifer K. Schultz, David R. Bellwood, Richard L. Pyle, Joseph D. DiBattista, Luiz A. Rocha, Brian W. Bowen | Evolution of pygmy angelfishes: recent divergences, introgression, and the usefulness of color in taxonomy | Molecular Phylogenetics and Evolution | Bowen, Brian |
| Kaipo Perez III, Ku‘ulei S. Rodgers, Paul L. Jokiel, Claire Lager | Impact of terrigenous sediment on larval survival and settlement in the reef coral Pocillopora damicornis | Peer J | Rodgers, Ku'ulei |
| Franklyn Tan Te, Paul L. Jokiel, and Ku‘ulei S. Rodgers | Responses of The Hawaiian Reef Coral Montipora capitata To Sediment Loading under Laboratory Conditions | Peer J | Rodgers, Ku'ulei |
| Kimberly R. Andrews, Virginia N. Moriwake, Christie Wilcox, E. Gordon Grau, Christopher Kelley, Richard L. Pyle, Brian W. Bowen | Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis marshi (family Lutjanidae) reveal concordant genetic structure across the Hawaiian Archipelago | PLoS One | Bowen, Brian |
| Jacqueline L. Padilla-Gamino, Laetitia Hédouin, Rhian G. Waller, Derek Smith, William Truong and Ruth D. Gates | Sedimentation and the reproductive biology of the Hawaiian reef building coral Montipora capitata | Biological Bulletin | Gates, Ruth |
| Kelly S. Boyle* Timothy C. Tricas (in press) | Discrimination of mates and intruders: visual and olfactory cues for a monogamous territorial coral reef butterflyfish | Animal Behaviour | Tricas, Tim |
| Whit Au | Dolphin biosonar target detection in noise: A wrap up of an old experiment | Journal of the Acoustical Society of America | Au, Whit |
| Flo Thomas | Epifaunal community structure and ammonium uptake compared for the invasive algae, Gracilaria salicornia and Acanthophora specifera, and the native alga, Padina thivyi | Journal of Experimental Marine Biology and Ecology | Thomas, Flo |
| Jokiel Paul L, Jury Christopher, Rodgers Ku’ulei S | Coral-algae metabolism and diurnal changes in the CO2- carbonate system of bulk sea water | Peer J | Ku'ulei Rodgers |
| Emma M. Gibbin, Hollie M. Putnam, Simon K. Davy, and Ruth D. Gates | Intracellular pH and its response to CO2-driven seawater acidification in symbiotic versus non-symbiotic coral cells | Journal of Experimental Biology | R. Gates |
| Xavier Pochon1, Hollie M. Putnam2 and Ruth D. Gates2 | Multi-gene analysis of Symbiodiniumdinoflagellates: a perspective on rarity,symbiosis, and evolution | PeerJ | Ruth Gates |
| Peter J. Edmunds, Xavier Pochon, Don R. Levitan, Denise M. Yost, Mahdi Belcaid, Hollie M. Putnam, Ruth D. Gates | Long-term changes in Symbiodinium communities in Orbicella annularis in St. John, US Virgin Islands | Marine Ecological Progress Series | Ruth Gates |
| Louise Kregting, Florence Thomas, Anna Bass, and Phil Yund. | Relative Effects of Gamete Compatibility and Hydrodynamics on Fertilization in the Green Sea Urchin Strongylocentrotus droebachiensis | The Biological Bulletin | Flo Thomas |
| Comeau S, Carpenter RC, Nojiri Y, Putnam HM, Sakai K, and Edmunds PJ. | Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidification | Proceedings of the Royal Society B | Hollie Putnam |
| Paul E. Nachtigall and Alexander Ya. Supin | Conditioned hearing sensitivity reduction in a bottlenose dolphin (tursiops truncatus) | Journal of Experimental Biology | Paul Nachtigall |
| Wilcox, CL & MA Hixon (2014). | False positive tests for ciguatera may derail efforts to control invasive lionfish | Environmental Biology of Fishes | Mark Hixon |
| Xavier Pochon, Ruth Gates, Dean Vik, Peter Edmunds | Molecular characterization of symbiotic algae (Symbiodinium spp.) in soritid foraminifera (Sorites orbiculus) and a scleractinian coral (Orbicella annularis) from St John, US Virgin Islands | Marine Biology | Ruth Gates |
| Kimberly A. Peyton, Lauren M. Valentino, and Karen P. Maruska | Dual roles of an algal farming damselfish as a cultivator and opportunistic browser of an invasive seaweed | PLoS One | Flo Thomas/Rob Toonen |
| Nyssa J. Silbiger, Òscar Guadayol, Florence I.M. Thomas, and Megan J. Donahue | Reefs shift from net accretion to net erosion along a natural environmental gradient | Marine Ecology Progress Series | Flo Thomas |
| Timothy C. Tricas and Kelly S. Boyle | Acoustic behaviors in Hawai’i coral reef fish communities | MEPS (Marine Ecology Progress Series) | Tim Tricas |
| Edmunds, PJ et al | Persistence and change through reef corals through present, past and future climates | PLoS One | Ruth Gates/Erik Franklin |
| Coleman Richard R, Gaither MR, Kimokeo B, Stanton F, Bowen BW, Toonen RJ | Large-scale introduction of the Indo-Pacific damselfish Abudefduf viagiensis into Hawai‘i promotes genetic swamping of the endemic congener A. abdominalis | Molecular Ecology | Brian Bowen |
| Emilia M. Sogin, Paul Anderson, Philip Williams, Chii-Shiarng Chen, Ruth D. Gates | Application of 1H-NMR metabolomic profiling for reef-building corals | PLoS One | Ruth Gates |
| Forsman ZH, Knapp ISS, Szabo Z, Toonen RJ | Intraspecific fluorescent phenotypes in Montipora capitata | Galaxia | Zac Forsman |
| Edmunds PJ, Burgess SC, Putnam HM, Baskett ML, Bramanti L, Fabina NS, Han X, Lesser MP, | Madin JS, Wall CB, Yost DM, and Gates RD | Evaluating the causal basis of ecological success | Hollie Putnam |
| Jessica Chen, Marc O. Lammers, Whitlow W.L. Au | Variation in the songs of humpback whales (Megaptera novaeangliae) wintering in the Northwestern and Main Hawaiian Islands | Journal of the Acoustical Society of America | W. Au |
| Belcaid M, Toonen R.J. | Demystifying Computer Science for Molecular Ecologists | Molecular Ecology | Mahdi Belcaid |
| Belcaid M, Putnam H.M, Yost D.M., Schanzenbach D., and Poisson G., Gates R.D. | SymTyper: A bioinformatic pipeline for the processing of Symbiodinium amplicon pyroseqencing data | Molecular Ecology Resources | Mahdi Belcaid |
| Silbiger, Nyssa and Megan Donahue. | Secondary calcification and dissolution respond differently to future ocean conditions | Biogeosciences Discussion | Megan Donahue |
| Silvia Beurmann,Patrick Videau,Blake Ushijima,Ashley M. Smith,Greta S. Aeby,Sean M. Callahan,Mahdi Belcaid | Complete Genome Sequence of Pseudoalteromonas sp. Strain OCN003,Isolated from Kane’ohe Bay, O’Ahu, Hawaii | Genome Announcements | Mahdi Belcaid |
| van Oppen MJH, Oliver JK, Putnam HM, and Gates RD. | (2015) Building coral reef resilience through assisted evolution | Proceedings of the National Academy of Sciences | Ruth Gates |
| Gibbin EM, Putnam HM, Gates RD, Nitschke MR, and Davy SK. | Species-specific differences in thermal tolerance may define susceptibility to intracellular acidosis in reef corals | Marine Biology | Ruth Gates |
| Pochon X, Forsman ZH, Spalding HL, Padilla-Gamiño JL, Smith C, Gates RD | Depth specialization in mesophotic corals (Leptoseris spp.) and associated algal symbionts in Hawai‘i | Royal Society Open Science | Ruth Gates |
| Melissa S. Roth, Jacqueline L. Padilla-Gamiño, Xavier Pochon, Robert R. Bidigare, Ruth D. Gates, Celia M. Smith, Heather L. Spalding | Fluorescent proteins in dominant mesophotic reef-building corals | Marine Ecological Progress Series | Ruth Gates |
| Zac Forsman, Gerrard M. Wellington, George E. Fox, Robert J. Toonen | Clues to unraveling the coral species problem: distinguishing species from geographic variation in Porites across the Pacific with molecular markers and microskeletal traits | PeerJ | Zac Forsman/Rob Toonen |
| Gorsope KD, Karl SA | Depth as an Organizing Force in Pocillopora damicornis: Intra-Reef Genetic Architecture | PLoS One | Steve Karl |
| Gaither MR, Bernal MA, Coleman R, Bowen BW, Jones SA, Simison WB, Rocha LA. | Genomic signatures of geographic isolation vs natural selection in coral reef fishes | Molecular Ecology | B. Bowen |
| Hui Ou, Whitlow W.L. Au | Discrimination of frequency-modulated Baleen whale downsweep calls with overlapping frequencies | Journal of the Acoustical Society of America | W. Au |
| Gorospe, KD, Donahue MJ, Karl SA (2015 | The importance of sampling design:spatial patterns and clonality in estimating the genetic diversity of coral reefs | Marine Biology | S. Karl |
| Craig E. Nelsona, Megan J. Donahueb, Henrieta Dulaiovac, Stuart J. Goldberga, Florybeth F. La Valleb, Katie Lubarskyb, Justin Miyanob, Christina Richardsonc, Nyssa J. Silbigerb and Florence I.M. Thomasb | Fluorescent dissolved organic matter as a multivariate biogeochemical tracer of submarine groundwater discharge in coral reef ecosystems | Marine Chemistry | M.Donahue |
| Nachtigall, Paul E. and Supin, Alexander Ya. | Conditioned frequency-dependent hearing sensitivity reduction in the bottlenose dolphin (Tursiops Truncatus) | Journal of Experimental Biology | P.Nachtigall |
| Mary Hagedorn1,2*, Virginia Carter1,2 | Seasonal Vitrification Success of the Marine Dinoflagellate Coral Symbiont, Symbodinium sp. | PLoS One | Mary Hagedorn |
| KD Bahr, PL Jokiel and RJ Toonen | The unnatural history of Kāne‘ohe Bay: Coral reef resilience in the face of centuries of anthropogenic impacts | Peer J | R. Toonen |
| Tricas, T.C. and Boyle, K.S. 2015 | Diversity and evolution of sound production in the social behavior of Chaetodon butterflyfishes | The Journal of Experimental Biology | T.Tricas |
| Tricas, T.C. and Boyle, K.S. 2015. | Sound pressure enhances the hearing sensitivity of Chaetodon butterflyfishes on noisy coral reefs | The Journal of Experimental Biology | T.Tricas |
| Mary Hagedorn1, Lynne R. Parenti2, Virginia Carter1, Zeehan Jaafar2,3, Kathleen S. Cole4 | Cryopreservation of Stem Cells:One of The Futures of Natural History Collections? | Biosciences | M.Hagedorn |
| Fernandez-Silva I., Randall J.E., Coleman R.R., DiBattista J.D., Rocha L.A., Reimer J. D., Meyer C.G., Bowen B.W | Phylogeography of the Indo-Pacific goatfish Mulloidichthys flavolineatus reveals isolation in peripheral provinces and cryptic evolutionary lineages | Journal of Biogeography | B.Bowen |
| DiBattista J.D., E. Waldrop, L.A. Rocha, M.T. Craig, M.L. Berumen, B.W. Bowen. | Blinded by the bright: A lack of congruence between color morphs, phylogeography, and taxonomy in a cosmopolitan Indo-Pacific butterflyfish, Chaetodon auriga | Journal of Biogeography | B.Bowen |
| Michael Stat, Denise M. Yost and Ruth D. Gates | Geographic structure and host-specificity shape the community composition of symbiotic dinoflagellates in corals from the Northwestern Hawaiian Islands | Coral Reefs | R. Gates |
| Putnam HM and Gates RD (2015) | Preconditioning in the reef-building coral Pocillopora damicornis and the potential for trans-generational acclimatization in coral larvae under future climate change conditions | The Journal of Experimental Biology | R. Gates |
| Chong Wei, Whitlow Au, Zhongchang Song, Yu Zhang | The role of various structures in the head on the formation of the biosonar beam of the Baiji (Lipotes vexillifer) | Journal of the Acoustical Society of America | W. Au |
| KD Bahr, KS Rodgers, and PL Jokiel | The 2014 coral bleaching and freshwater flood events in Kāneʻohe Bay, Hawaiʻi | Peer J | K. Rodgers/P. Jokiel |
| Giacomo Giorli, Whitlow W. L. Au, Anna Neuheimer | Differences in foraging activity of deep sea diving odontocetes in the Ligurian Sea as determined by passive acoustic recorders | Deep sea Research Part I | W. Au |
| Zac H. Forsman, Christopher A. Page, Robert J. Toonen, and David Vaughan | Growing coral larger and faster: micro-colony-fusion as a strategy for accelerating coral cover (2015) | Peer J | Z. Forsman |
| Iacchei M, Gaither MR, Bowen BW, Toonen RJ | Testing dispersal limits in the sea: range-wide phylogeography of the pronghorn spiny lobster Panulirus penicillatus | Journal of Biogeography | B.Bowen/R.Toonen |
| Weitzman, Joel S., Robert B. Zeller, Florence I.M. Thomas, Jeffrey R. Koseff | The attenuation of current- and wave-driven flow within submerged polycultural vegetative canopies | Limnology and Oceanography | F. Thomas |
| Jungbluth, S. P., R. Bowers, H.-T. Lin, J. P. Cowen, and M. S. Rappé (2015) | Subsurface fluids from basement basalt of the Juan de Fuca Ridge possess microbial communities that are distinct from overlying sediments and surrounding seawater | The ISME Journal | M. Rappe |
| Oyafuso, ZS, Toonen RJ, Franklin EC. | Temporal and spatial trends in prey composition of wahoo (Acanthocybium solandri): A diet analysis from the central North Pacific using visual and metabarcoding techniques | Journal of Fish Biology | E. Franklin/R. Toonen |
| Edmunds, P.J., J.J. Leichter, EC. Johnston, E. Tong & R.J. Toonen. | Ecological and genetic variation in reef building corals on four islands in French Polynesia | Limnology & Oceanography, In press | R. Toonen |
| Nachigall, P., Pacini, AF, Supin, AY, Estaban, JA | Learning and extinction of conditioned hearing sensation change in the beluga whale (Delphinapterus leucas) | Journal of Comparative Physiology A | P. Nachtigall/A. Pacini |
| Kaleonani KC Hurley, Molly A Timmers, L Scott Godwin, Joshua M Copus, Derek J Skillings, Robert J Toonen | An assessment of shallow and mesophotic reef brachyuran crab assemblages on the south shore of Oʻahu, Hawaiʻi | Coral Reefs | R. Toonen |
| Toonen, R.J., J. Briggs, M. Iacchei & B.W. Bowen. | Marine Biogeography | Encyclopedia of Evolutionary Biology | B. Bowen/R. Toonen |
| Mary Hagedorn1,2*, Virginia Carter1,2, Clair Lager2, Julio F. Camperio Ciani1,2, Alison N. Dygert1,2, Reuben D. Schleiger1,2 and E. Michael Henley1,2 | Potential bleaching effects on coral reproduction | Reproduction, Fertility and Development | M. Hagedorn |
| Ross Cunning. Denise M Yost, Marisa L Guarinello, Hollie M Putnam, Ruth D Gates | Variability of Symbiodinium communities in waters, sediments, and corals of thermally distinct reef pools in American Samoa | PLoS ONE | R. Gates |
| Adam B. Smith, Laura N. Kloepper, Wei-Cheng Yang, Wan-Hsiu Huang, I-Fan Jen, Brendan P. Rideout, Paul E. Nachtigall | Transmission beam pattern of a Risso's dolphin (Grampus griseus) | Journal of the Acoustical Society of America | P. Nachtigall/A. Smith |
| Keisha D. Bahr, Paul L. Jokiel, Ku’ulei S. Rodgers | Relative sensitivity of five Hawaiian coral species to high temperature under high pCO2 conditions | Coral Reefs | P. Jokiel/K. Rodgers |
| Jessica Chen, Adam A. Pack, Whitlow W.L. Au, and Alison K. Stimpert. | First measurements of humpback whale song sound levels received by a calf in association with a singer | Journal of the Acoustical Society of America | W. Au/J. Chen |
| Kapur MR, Franklin EC (2016) | Predicting climate impacts on coral reef fishes: are contemporary spatial fishery management strategies sufficient? | Canadian Journal of Fisheries and Aquatic Sciences | E. Franklin |
| Winston MS, Taylor BM Franklin EC (2016) | Intraspecific variability in the life history of endemic coral reef fishes between photic and mesophotic depths in the central Pacific Ocean. | Coral Reefs | E. Franklin |
| DiBattista, J.D., M.R. Gaither, J.-P. A. Hobbs, L.A. Rocha, B.W. Bowen. | Angelfishes, paper tigers, and the devilish taxonomy of the Centropyge flavissima complex. | Journal of Heredity | B. Bowen |
| Giacomo Giorli, Anna Neuheimer, Adrienne Copeland, and Whitlow W.L. Au | Temporal and spatial variation of beaked and sperm whales foraging activity in Hawai'i, as determined with passive acoustics. | Journal of the Acoustical Society of America | W. Au |
| Paul E. Nachtigall, Alexander Ya. Supin, Aude F. Pacini, and Roland A. Kastelein | Conditioned hearing sensitivity change in the harbor porpoise (Phocoena phocoena). | Journal of Acoustical Society of America. | P. Nachtigall/A. Pacini |
| Giacomo Giorli, Anna Neuheimer , Whitlow W. L. Au | Spatial variation of deep diving odontocetes' occurrence around a canyon region in the Ligurian Sea as measured with acoustic techniques. | Deep Sea Research Part I | W. Au |
| Cros A, Toonen RJ, Davies SW, Karl SA (2016) | Population genetic structure between Yap and Palau for the coral Acropora hyacinthus. | PeerJ | S. Karl/R. Toonen |
| Hollie M. Putnam, Jennifer M. Davidson, Ruth D. Gates | Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals. | Evolutionary Applications | R. Gates |
| Veazey L, Franklin EC, Kelley C, Rooney J, Frazer NL, Toonen RJ (2016) | The implementation of rare events logistic regression to predict the distribution of mesophotic hard corals across the main Hawaiian Islands. | PeerJ | E. Franklin/R. Toonen |
| Wren, J. L.K., D. R. Kobayashi, Y. Jia, and R. J. Toonen. 2016. | Modeled population connectivity across the Hawaiian Archipelago. | PLoS One | R. Toonen |
| Concepcion, G.T., J. Kenyon, I.B. Baums & R.J. Toonen (2016) | Genetic evidence for possible coral larval dispersal from the Northern Line Islands to the Hawaiian Archipelago. | Galaxea | R. Toonen |
| DiBattista J.D., J. Whitney, M.T. Craig, J.-P. A. Hobbs, L.A. Rocha, K.A. Feldheim, M.L. Berumen, B.W. Bowen | Surgeons and suture zones: hybridization among four surgeonfish species in the Indo-Pacific with variable evolutionary outcomes. | Molecular Phylogenetics and Evolution | B. Bowen |
| J.H.R.Burns, D. Delparte, L. Kapono, M. Belt, R.D. Gates and M. Takabayashi | Assessing the impact of acute disturbances on the structure and composition of a coral community using innovative 3D reconstruction techniques. | Methods in Oceanography | R. Gates |
| Ross Cunning, Raphael Ritson-Williams, Ruth D Gates | Patterns of bleaching and recovery of Montipora capitata in Kaneohe Bay. | Marine Ecology Progress Series | R. Gates |
| KD Bahr, PL Jokiel, KS Rodgers | Seasonal and annual growth rates of the Hawaiian reef coral, Montipora capitata, under present and future climate change scenarios. | ICES Journal of Marine Science | PL Jokiel, KS Rodgers |
| Bowen, B.W. | The three domains of conservation genetics: Case histories from the Hawaiian waters. | Journal of Heredity | B. Bowen |
| Andrews, K.R., A.J. Williams, I. Fernandez-Silva, S.J. Newman, J.M. Copus, C. Wakefield, J.E. Randall, B.W. Bowen. | Phylogeny of deepwater snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of the Atlantic. | Molecular Phylogenetics and Evolution | B. Bowen/J.M. Copus |
| Coleman RR, Eble JA, DiBattista JD, Rocha LA, Randall JE, Berumen ML, Bowen BW | Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean. | Molecular Phylogenetics and Evolution | B. Bowen/R. Coleman |
| KD Bahr, PL Jokiel, KS Rodgers | Influence of solar irradiance on underwater temperature recorded by temperature loggers on coral reefs. | Limnology and Oceanography: Methods | P. Jokiel/K. Rodgers |
| Nachtigall, P.E., Supin, A. Ya., Smith, A.B., and Pacini, A.F | Expectancy and conditioned hearing levels in the bottlenose dolphin (Tursiops truncatus). | Journal of Experimental Biology | P. Nachtigall/A. Pacini |
| Nyssa Silbiger; Òscar Guadayol; Florence I.M. Thomas; Megan Donahue | A novel microCT analysis to calculate coral reef bioerosion and secondary accretion rates. | PLoS One | M. Donahue/F. Thomas |
| Laetitia Hedouin, Ruth E Wolf, Jeff Phillips and Ruth D Gates | Improving The Ecological Relevance of Toxicity Tests On Scleractinian Corals: Influence of Season, Life Stage, and Seawater Temperature. | Environmental Pollution | R. Gates |
| Whitlow W. L Au, Stephen W. Martin, Patrick W. Moore, Brian Branstetter, Adrienne M. Copeland | Dynamics of biosonar signals in free-swimming and stationary dolphins: The role of source levels on the characteristics of the signals. | Journal of the Acoustical Society of America | W. Au |
| Mary Hagedorn, Virginia Carter | Cryobiology: Principles, Species Conservation and Benefits For Coral Reefs. | Journal of Reproduction, Fertility and Development | M. Hagedorn |
| Paul E. Nachtigall | Biosonar and Sound Localization in Dolphins | Oxford Research Encyclopedia of Neuroscience | P. Nachtigall |
| Jungbluth SP, Glavina del Rio T, Tringe S, Stepanauskas R, Rappe MS (2017) | Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems | PeerJ | M . Rappe |
| Jungbluth SP, Amend JP, Rappe MS (2017) | Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge Flank subsurface fluids | Scientific Data. | M. Rappe |
| Giacomo Giorli, Whitlow W. L. Au | Spatio-temporal variation and seasonality of Odontocetes' foraging activity in the leeward side of the island of Hawaii | Deep Sea Research I | W. Au |
| Cros A, Toonen RJ, Donahue MJ, Karl SA | Connecting Palau¹s marine protected areas: A population genetic approach to conservation | Coral Reefs | S. Karl |
| Longenecker K., Langston R., Bolick H., Crane M., Donaldson T.J, Franklin E.C., Kelokelo M., Kondio U., Potuku T. 2017 | Rapid reproductive analysis and length–weight relations for five species of coral-reef fishes from Papua New Guinea: Nemipterus isacanthus, Parupeneus barberinus, Kyphosus cinerascens, Ctenochaetus striatus, and Balistapus undulatus. | Acta Ichthyologica et Piscatoria | E. Franklin |
| Garen Baghdasarian, Andrew Osberg, Danielle Mihora, Hollie Putnam, Ruth D. Gates, Peter J. Edmunds | The effects of temperature and pCO2 on the population regulation of Symbiodinium spp. in a tropical reef coral | Biological Bulletin | R. Gates |
| Emilia Sogin, Hollie Putnam, Craig Nelson, Paul Anderson, Ruth Gates | Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities | Environmental Microbiology and Environmental Microbiology Reports | R. Gates |
| Puritz, J. B., C. C. Keever, J. A. Addison, S. S. Barbosa, M. Byrne, M. W. Hart, R. K. Grosberg, and R. J. Toonen (2017). | Life History Predicts Past and Present Population Connectivity in Two Sympatric Sea Stars | Ecology & Evolution. In press. | ToBo |
| McFadden C, Haverkort-Yeh R, Reynolds A, Halasz A, Quattrini A, Forsman ZH, Benayahu Y, Toonen RJ | Species boundaries in the absence of morphological, ecological or geographical differentiation in the Red Sea octocoral genus Ovabunda (Alcyonacea: Xeniidae). | Molecular Phylogenetics and Evolution | ToBo |
| Forsman ZH, Knapp ISS, Eaton DAR, Belcaid M, Toonen RJ | Coral hybridization or polymorphism? Genomic data reveal gene flow between Porites lobata and P. compressa. | Molecular Phylogenetics and Evolution. | ToBo |
| Ku'ulei Rodgers, Keisha Bahr, Angela Richards Dona | Patterns of bleaching and mortality following widespread warming events in 2014 and 2015 at the Hanauma Bay Nature Preserve, Hawai‘i | PeerJ | Point |
| Hollie M. Putnam1,5*, Katie L. Barott2,3,5, Tracy D. Ainsworth4 and Ruth D. Gates3 | The Vulnerability and Resilience of Reef-Building Corals | Current Biology | R. Gates |
| Oyafuso, Z.S., J.C. Drazen, C.H. Moore, and E.C. Franklin | Habitat-based species distribution models of Hawaiian deep-slope fishes with implications for fisheries management | Fisheries Research | E. Franklin |
| Longenecker K, Langston R, Bolick H, Crane M, Donaldson T, Franklin EC, Kelokelp M, Kondio U, Potuku T (2017) | Rapid reproductive analysis and length-weight relations for five species of coral-reef fishes (Actinopterygii) from Papua New Guinea: Nemipterus Isacanthus, Parupeneus barberinus, Kyphosus cinerascens, Ctenochaetus striatus, and Balistapus unduluatus. | Acta Ichthyologica et Piscatoria | E. Franklin |
| Nyssa Silbiger, Megan Donahue, Rusty Brainard | Environmental drivers of coral reef carbonate production and bioerosion: a multi-scale analysis | Ecology | M. Donahue |
| Brown, D. P., et al. [Z. H. Forsman], 2009 | American Samoa's island of giants: massive Porites colonies at Ta'u island | Coral Reefs | Z. Forsman |
| Forsman, Z. H., and C. Birkeland, 2009 | Porites randalli: a new coral species (Scleractinia, Poritidae) from American Samoa | Zootaxa | Z. Forsman |
| Forsman, Z. H., D. Barshis, C. L. Hunter, and R. J. Toonen, 2009 | Shape-shifting corals: Molecular markers show morphology is evolutionarily plastic in Porites | BMC Evol. Biol. | Z. Forsman / R. Toonen |
| Luck, D. G., Z. H. Forsman, R. J. Toonen, S. J. Leicht, and S. E. Kahng, 2013 | Polyphyly and hidden species among in Hawai'i's dominant mesophotic coral genera, Leptoseris and Pavona (Scleractinia: Agariciidae) | PeerJ | Z. Forsman / R. Toonen |
| Price, M. R., Z. H. Forsman, I. S. Knapp, R. J. Toonen, and M. G. Hadfield, 2016 | The complete mitochondrial genome of Achatinella sowerbyana (Gastropoda: Pulmonata: Stylommatophora: Achatinellidae) | Mitochond. DNA B | Z. Forsman / R. Toonen |
| Colín García, N. A., et al. [Z. H. Forsman], 2017 | Comparative molecular and morphological variation of Siderastrea stellata in the Gulf of Mexico | Biol. Bull | Z. Forsman |
| Prada, C., et al. [Z. H. Forsman], 2014 | Genetic species delineation among branching Caribbean Porites corals | Coral Reefs | Z. Forsman |
| Knapp, I. S., et al. [Z. H. Forsman, R. J. Toonen], 2015 | Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella) caerulea), (order: Haplosclerida) to Palmyra Atoll, Central Pacific | PeerJ | Z. Forsman |
| Capel, K. C. C., et al. [Z. H. Forsman], 2016 | The mitochondrial genomes from the Atlantic invasive coral species, Tubastraea coccinea and T. tagusensis (Scleractinia, Dendrophylliidae): Implications for species identification | Gene | Z. Forsman |
| LaJeunesse, T. C., Z. H. Forsman, and D. C. Wham, 2016 | An Indo-West Pacific ‘zooxanthella’ invasive to the western Atlantic finds its way to the Eastern Pacific via an introduced Caribbean coral | Coral Reefs | Z. Forsman |
| Tisthammer, K. H., et al. [Z. H. Forsman, R. J. Toonen], 2016 | The complete mitochondrial genome of the lobe coral Porites lobata (Anthozoa:Scleractinia) sequenced using ezRAD | Mitochond. DNA B | Z. Forsman / R. Toonen |
| Wilcox C.L., H. Motomura, M. Matsunuma, B.W. Bowen. 2017. | Phylogeographic analyses of lionfish (Pterois) species indicate taxonomic oversplitting and hybrid origin for the invasive Pterois volitans | Journal of Heredity In press | B. Bowen |
| Franklin EC (2017) | Vagrancy in paradise: documentation of the chevron butterflyfish Chaetodon trifascialis in Kaneohe Bay, Oahu, Hawaiian Islands | Marine Biodiversity Records | E. Franklin |
| C.B. Wall, R.A.B. Mason, W.R. Ellis, R. Cunning, R.D. Gates | Elevated pCO2 affects tissue biomass composition, but not calcification, in a reef coral under two light regimes. | Royal Society Open Science | R. Gates |
| Mary Hagedorn1,2*, Virginia L. Carter1,2, E. Michael Henley2, Madeleine JH van Oppen3,4, Rebecca Hobbs5, Rebecca Spindler5 | Producing Coral Offspring with Cryopreserved Sperm: A Tool for Coral Reef Restoration | Nature Scientific Reports | Hagedorn, Mary |
| Julian A. Tyne, Fredrik Christiansen, Heather L. Heenehan, David W. Johnston and Lars Bejder | Chronic exposure of Hawaii Island spinner dolphins (Stenella longirostris) to human activities. | Royal Society Open Science. | Bejder, L |
| Krützen, M, Beasley, I., Ackermann, C.Y., Lieckfeldt, D., Ludwig, A., Ryan, G., Bejder, L., Parra, G., Wolfensberger, R. and Spencer, P. | Demographic collapse and low genetic diversity of the Irrawaddy dolphin population inhabiting the Mekong River. | PLOS ONE. | Bejder, L |
| Jonathan L. Whitney, Megan J. Donahue, and Stephen A. Karl | Niche divergence along a fine-scale ecological gradient in sympatric color morphs of a coral reef fish | Ecosphere | Donahue/Karl |
| Jeremy Claisse, Daniel Pondella II, Jonathan Williams, Chelsea Williams, Morgan Winston | Age and growth of the Giant Kelpfish, Heterostichus rostratus Girard 1854, in southern California, USA | Journal of Applied Ichthyology | E. Franklin |
| Keisha D Bahr, Ku'ulei S Rodgers, Paul L Jokiel | Impact of three bleaching events on the reef resiliency of Kaneohe Bay, Hawaii | Frontiers in Marine Science, Coral Reef Research | Rodgers, Ku'ulei |
| Smith, AB, Pacini, AF, Nachtigall, PE | Modulation Rate Transfer Functions from four species of stranded odontocete (Stenella longirostris, Feresa attenuata, Globicephala melas, Mesoplodon densirostris) | Journal of Comparative Physiology A | Nachtigall, Paul |
| Lemus, J.D. | Impacts of a Holistic Place-Based Community Internship on Participant Interest in Science and Conservation Pathways | Journal of STEM Outreach, v. 1(1) 2018 | Lemus, Judy |
| Giacomo Giorli, Jeff Drazen, Anna Neuheimer, Adrienne Copeland and Whitlow W. L. Au | Deep sea animal density and size estimated using a Dual-frequency IDentification SONar (DIDSON) offshore the island of Hawaii | Progress in Oceanography | Au, Whitlow |
| Erika C. Johnston1*, Zac H. Forsman1, Robert J. Toonen1 | A simple molecular technique for distinguishing species reveals frequent misidentification of Hawaiian corals in the genus Pocillopora. | PeerJ | Toonen, Rob |
| ʻAleʻalani Dudoit, Matthew Iacchei, Richard R. Coleman, Michelle R. Gaither, William E. Browne, Brian W. Bowen, and Robert J. Toonen | The little shrimp that could: phylogeography of the circumtropical Stenopus hispidus (Crustacea: Decapoda), reveals divergent Atlantic and Pacific lineages. | PeerJ | Toonen, Rob Bowen, Brian |
| Germanov, G., Marshall, A., Bejder, L., Fossi, C. And Loneragan, N. | Microplastics: No Small Problem for Filter Feeding Megafauna. Trends in Ecology and Evolution | In Press. | Bejder, L |
| Terraneo TI, Arrigoni R, Benzoni F, Forsman ZH, Berumen ML (2018) | The complete mitochondrial genome of Porites harrisoni (Cnidaria: Scleractinia) obtained using Next Generation Sequencing. Mitochondrial DNA Part B: Resources | In Press. | Forsman, Zac |
| Terraneo TI, Arrigoni R, Benzoni F, Forsman ZH, Berumen ML (2018) | Using ezRAD to reconstruct the complete mitochondrial genome of Porites fontanesii (Cnidaria: Scleractinia). Mitochondrial DNA Part B: Resources | In Press. | Forsman, Zac |
| Symons, J., Sprogis, K and Bejder, L. | Implications of survey effort on estimating demographic parameters of a long-lived marine top predator | Ecology and Evolution. | Bejder, L |
| Jonathan L Whitney, Brian W Bowen, and Stephen A Karl | Flickers of speciation: sympatric color morphs of the arc-eye hawkfish, Paracirrhites arcatus, reveal key elements of divergence-with-gene-flow' | Molecular Ecology | Karl, Steve Bowen, Brian |
| Joshua Levy, Cynthia Hunter, Trent Lukacazyk, Erik C. Franklin | ASSESSING THE SPATIAL DISTRIBUTION OF CORAL BLEACHING USING SMALL UNMANNED AERIAL SYSTEMS | Coral Reefs | Franklin |
| Katie A. Lubarsky, Nyssa J. Silbiger, Megan J. Donahue | Effects of submarine groundwater discharge on coral accretion and bioerosion on two shallow reef flats | Limnology & Oceanography, In press | Donahue |
| Christiansen, F., Vivier, F., Charlton, C., Ward, R., Amerson, A., Burnell, S. and Bejder, L | Maternal body size and condition determine calf growth rates in Southern right whales. | Marine Ecology Progress Series | Bejder, L |
| Wall CB, CA Ricci, GE Foulds, LD Mydlarz, RD Gates, HM Putnam (2018) | The effects of environmental history and thermal stress on coral physiology and immunity. | Marine Biology (in press) | Donahue, M. |
| Carl G. Meyer, James M. Anderson, Daniel M. Coffey, Melanie R. Hutchinson, Mark A. Royer and Kim N. Holland | Habitat geography around Hawaii’s oceanic islands influences tiger shark (Galeocerdo cuvier) spatial behaviour and shark bite risk at ocean recreation sites | Scientific Reports | Holland, K. Meyer, C. |
| Jenny E. House, Viviana Brambilla, Luc M. Bidaut, Alec P. Christie, Oscar Pizarro, Joshua S. Madin, Maria Dornelas | Moving to 3D: relationships between coral planar area, surface area and volume | PeerJ | Madin, J. |
| Mike McWilliam, Mia O. Hoogenboom, Andrew H. Baird, Chao-Yang Kuo, Joshua S. Madin and Terry P. Hughes | Biogeographical disparity in the functional diversity and redundancy of corals | PNAS (Proceedings of the National Academy of Sciences of the United States of America) | Madin, J. |
| Coleman RR, Copus JM, Coffey DM, Whitton RK, Bowen BW | Shifting reef fish assemblages along a depth gradient in Pohnpei, Micronesia | PeerJ | Bowen, B. |
| Mary M. Hagedorn, Jonathan P. Daly, Virginia L. Carter, Kathleen S. Cole, Zeehan Jaafar, Claire V. A. Lager, and Lynne R. Parenti | Cryopreservation of Fish Spermatogonial Cells: The Future of Natural History Collections | Scientific Reports | Hagedorn, Mary |
| Guest JR1*†, Edmunds PJ2, Gates RD1, Kuffner IB3, Andersson AJ4, Barnes BB5, Chollett I6, Elahi R7, Courtney TA4, Gross K8, Lenz EA1, Mitarai S9, Mumby PJ10, Nelson HR2, Parker BA11, Putnam HM12, Rogers CS13, Toth LT3 | A framework for identifying and characterising coral reef ‘oases’ against a backdrop of degradation | Journal of Applied Ecology | Gates, R. |
| SL Coles, KD Bahr, KS Rodgers, SL May, A McGowan, A Tsang, J Bumgarner and JH Han | Evidence of Acclimatization or Adaptation in Hawaiian Corals to Higher Ocean Temperatures | PeerJ | Rodgers, Ku'ulei |
| Silbiger, Nyssa; Nelson, Craig; Remple, Kristina; Sevilla, Jessica; Quinlan, Zachary; Putnam, Hollie; Fox, Michael; Donahue, Megan | Nutrient pollution disrupts key ecosystem functions on coral reefs | Proceedings of the Royal Society B: Biological Sciences | Donahue, M. |
| Chelsie W. W. Counsell, Megan J. Donahue, Kyle F. Edwards, Erik C. Franklin, Mark A. Hixon. | Variation in coral-associated cryptofaunal communities across spatial scales and environmental gradients. | Coral Reefs. | Donahue, M. Franklin, E. |
| Sprogis, K., Christiansen, F., Raudino, H., Kobryn, H., Wells, R. and Bejder, L. | Sex-specific differences in seasonal habitat use of a coastal dolphin population | Biodiversity and Conservation. | Bejder, L |
| Huffmyer, A.M. and J.D. Lemus | Graduate TA Teaching Behaviors Impact Student Achievement in a Research Based Undergraduate Science Course. | Journal of College Science Teaching | Lemus, Judy |
| Forsman ZH1, Maurin P2, Parry M2, Chung, A3, Sartor C2, Hixon MA3, Hughes K1, Rodgers K1,Knapp ISS1,Gulko DA4, Franklin E1, Del Rio Torres L4, Chan NT4, Wolke CS4, Gates RD1, Toonen RJ1 | The First Hawai‘i Workshop For Coral Restoration & Nurseries | Marine Policy | Rodgers, Ku'ulei Franklin, Erik Gates, Ruth Toonen, Robert |
| Manlik, O., Chabanne, D., Daniel, C., Bejder, L., Allen, S., and Sherwin, W. | Demographic and genetics study suggest reversal of source-sink dynamics of dolphin populations, with implications for conservation | Marine Mammal Science | Bejder, Lars |
| Sprogis, K., King, C., Bejder, L. and Loneragan, L. | Frequency and temporal trends of shark predation attempts on bottlenose dolphins (Tursiops aduncus) in temperate Australian waters. | Journal of Experimental Marine Biology and Ecology. | Bejder, Lars |
| Copus JM, Montgomery WL, Forsman ZH, Bowen BW, Toonen RJ. | Geopolitical species revisited: genomic and morphological data indicate that the roundtail chub Gila robusta species complex (Teleostei, Cyprinidae) is a single species | PeerJ | Forsman, Zac Bowen, Brian Toonen, Robert |